Application of a High-Performance, Special-Purpose Computer, GRAPE-2A, to Molecular Dynamics. - Junichi Higo; Shigeru Endo; Kuniaki Nagayama; Tomoyoshi Ito; Toshiyuki Fukushige; Toshikazu Ebisuzaki; Daiichiro Sugimoto; Hiroo Miyagawa; Kunihiro Kitamura; Junichiro Makino (J. Comput. Chem., 1994)

Stability of Two-Dimensional Crystalline Aggregates of a PRotein Studied by Molecular Dynamics. - Junichi Higo; Mariko Yamaki; Michiru Hogyoku; Takuya Takahashi; Shigeru Endo; Kuniaki Nagayama (J. Comput. Chem., 1994)

New implementation of and the modeling by the extended simulated annealing process to structures of T4 lysozyme mutants at the 86th residue. - Shigeru Endo; Junichi Higo; Kuniaki Nagayama; Hiroshi Wako (J. Comput. Chem., 1996)

ProMode: a database of normal mode analyses on protein molecules with a full-atom model. - Hiroshi Wako; Masaki Kato; Shigeru Endo (Bioinform., 2004)

Normal mode analysis based on an elastic network model for biomolecules in the Protein Data Bank, which uses dihedral angles as independent variables. - Hiroshi Wako; Shigeru Endo (Comput. Biol. Chem., 2013)