P-quasi Complete Linkage Analysis for Gene-Expression Data. - Shigeto Seno; Reiji Teramoto; Hideo Matsuda (CSB, 2002)

Improved Prediction Method for Protein Interactions Using Both Structural and Functional Characteristics of Proteins. - Tatsuya Yoshikawa; Shigeto Seno; Yoichi Takenaka; Hideo Matsuda (Inf. Media Technol., 2010)

An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems. - Yukito Watanabe; Shigeto Seno; Yoichi Takenaka; Hideo Matsuda (BMC Genom., 2012)

A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping. - Tomoshige Ohno; Shigeto Seno; Yoichi Takenaka; Hideo Matsuda (Inf. Media Technol., 2012)

A Segmentation Method for Bone Marrow Cavity Imaging Using Graph Cuts. - Tomohiro Mashita; Jun Usam; Hironori Shigeta; Yoshihiro Kuroda; Junichi Kikuta; Shigeto Seno; Masaru Ishii; Hideo Matsuda; Haruo Takemura (I3A@ICPR, 2014)

A Graph Cuts Image Segmentation Method for Quantifying Barrier Permeation in Bone Tissue. - Hironori Shigeta; Tomohiro Mashita; Takeshi Kaneko; Junichi Kikuta; Shigeto Seno; Haruo Takemura; Hideo Matsuda; Masaru Ishii (I3A@ICPR, 2014)

Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution. - Yoichi Takenaka; Shigeto Seno; Hideo Matsuda (J. Bioinform. Comput. Biol., 2015)

Comparative Analysis of Transformation Methods for Gene Expression Profiles in Breast Cancer Datasets. - Yoshiaki Sota; Shigeto Seno; Yoichi Takenaka; Shinzaburo Noguchi; Hideo Matsuda (BIBE, 2016)

A bone marrow cavity segmentation method using wavelet-based texture feature. - Hironori Shigeta; Tomohiro Mashita; Junichi Kikuta; Shigeto Seno; Haruo Takemura; Hideo Matsuda; Masaru Ishii (ICPR, 2016)

Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature. - Hironori Shigeta; Tomohiro Mashita; Junichi Kikuta; Shigeto Seno; Haruo Takemura; Masaru Ishii; Hideo Matsuda (J. Bioinform. Comput. Biol., 2017)

Detection of Fusion Genes from Human Breast Cancer Cell-Line RNA-Seq Data Using Shifted Short Read Clustering. - Yoshiaki Sota; Shigeto Seno; Hironori Shigeta; Naoki Osato; Masafumi Shimoda; Shinzaburo Noguchi; Hideo Matsuda (BIBE, 2018)

Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis. - Mitsuhiro Eto; Wataru Hirota; Shigeto Seno; Hideo Matsuda (BIBM, 2018)

Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells. - Yoichi Takenaka; Kazuma Mikami; Shigeto Seno; Hideo Matsuda (BMC Bioinform., 2018)

Analyzing Leukocyte Migration Trajectories by Deformable Image Matching. - Hironori Shigeta; Shigeto Seno; Shino Nishizawa; Yutaka Uchida; Junichi Kikuta; Masaru Ishii; Hideo Matsuda (BIBE, 2019)

Single-cell Transcriptome Analysis of Mouse Leukocytes in Inflammatory Stimulation. - Naoki Osato; Hironori Shigeta; Shigeto Seno; Yutaka Uchida; Junichi Kikuta; Masaru Ishii; Hideo Matsuda (BIBM, 2019)

Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads. - Yoshiaki Sota; Shigeto Seno; Hironori Shigeta; Naoki Osato; Masafumi Shimoda; Shinzaburo Noguchi; Hideo Matsuda (J. Bioinform. Comput. Biol., 2019)

Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm. - Viacheslav Kapilevich; Shigeto Seno; Hideo Matsuda; Yoichi Takenaka (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

A CNN-based cell tracking method for multi-slice intravital imaging data. - Kenji Fujimoto; Tsubasa Mizugaki; Utkrisht Rajkumar; Hironori Shigeta; Shigeto Seno; Yutaka Uchida; Masaru Ishii; Vineet Bafna; Hideo Matsuda (BCB, 2021)

It's DONE: Direct ONE-shot learning without training optimization. - Kazufumi Hosoda; Keigo Nishida; Shigeto Seno; Tomohiro Mashita; Hideki Kashioka; Izumi Ohzawa (CoRR, 2022)

Simulating reaction time for Eureka effect in visual object recognition using artificial neural network. - Kazufumi Hosoda; Shigeto Seno; Tsutomu Murata (CoRR, 2022)

Cell Tracking via Reinforcement Learning with Microscopic Image Simulator. - Toru Nagamura; Shigeto Seno; Hironori Shigeta; Tomohiro Mashita; Hideo Matsuda (ICBET, 2023)

Pseudotime-based Deep Learning of Gene Regulatory Relationships from Single-Cell Expression Data. - Koki Nishi; Junko Yoshida; Shigeto Seno; Kyoji Horie; Hideo Matsuda (ICBET, 2023)

Biodiversity and Constrained Information Dynamics in Ecosystems: A Framework for Living Systems. - Kazufumi Hosoda; Shigeto Seno; Rikuto Kamiura; Naomi Murakami; Michio Kondoh (Entropy, 2023)

Communication Analysis between Human Hair-Follicles and Immune Cells with Single-cell RNA-seq. - Ayaka Mori-Ichioka; Hironori Shigeta; Shigeto Seno; Hideo Matsuda (ICBBE, 2024)

Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach. - Kazufumi Hosoda; Shigeto Seno; Naomi Murakami; Hideo Matsuda; Yutaka Osada; Rikuto Kamiura; Michio Kondoh (Biosyst., 2024)

Learning from Similarity Proportion Loss for Classifying Skeletal Muscle Recovery Stages. - Yu Yamaoka; Weng Ian Chan; Shigeto Seno; Soichiro Fukada; Hideo Matsuda (CoRR, 2025)