pKNOT: the protein KNOT web server. - Yan-Long Lai; Shih-Chung Yen; Sung-Huan Yu; Jenn-Kang Hwang (Nucleic Acids Res., 2007)

Identification of a Potent CDK8 Inhibitor Using Structure-Based Virtual Screening. - Tony Eight Lin; Ching-Hsuan Chou; Yi-Wen Wu; Tzu-Ying Sung; Jui-Yi Hsu; Shih-Chung Yen; Jui-Hua Hsieh; Yu-Wei Chang; Shiow-Lin Pan; Wei-Jan Huang; Kai-Cheng Hsu; Chia-Ron Yang (J. Chem. Inf. Model., 2025)

SCOPE-DTI: Semi-Inductive Dataset Construction and Framework Optimization for Practical Usability Enhancement in Deep Learning-Based Drug Target Interaction Prediction. - Yigang Chen 001; Xiang Ji; Ziyue Zhang; Yuming Zhou; Yang-Chi-Dung Lin; Hsi-Yuan Huang; Tao Zhang; Yi Lai; Ke Chen; Chang Su; Xingqiao Lin; Zihao Zhu; et al. (CoRR, 2025)