A New Parallelization Method for K-means. - Shikai Jin; Yuxuan Cui; Chunli Yu (CoRR, 2016)

Risk Assessment and Online Forewarning of Oil & Gas Storage and Transportation Facilities Based on Data Mining. - Tianteng Wang; Tong Li; Yingzhi Xia; Zexi Zhang; Shikai Jin (KES, 2017)

AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes. - Shikai Jin; Vinícius G. Contessoto; Mingchen Chen; Nicholas P. Schafer; Wei Lu; Xun Chen; Carlos Bueno; Arya Hajitaheri; Brian J. Sirovetz; Aram Davtyan; Garegin A. Papoian; Min-Yeh Tsai; et al. (Nucleic Acids Res., 2020)

OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations. - Wei Lu; Carlos Bueno; Nicholas P. Schafer; Joshua Moller; Shikai Jin; Xun Chen; Mingchen Chen; Xinyu Gu; Aram Davtyan; Juan J. de Pablo; Peter G. Wolynes (PLoS Comput. Biol., 2021)

CrysFormer: Protein Structure Prediction via 3d Patterson Maps and Partial Structure Attention. - Chen Dun; Qiutai Pan; Shikai Jin; Ria Stevens; Mitchell D. Miller; George N. Phillips Jr.; Anastasios Kyrillidis (CoRR, 2023)

Learning Cross-Domain Representations for Transferable Drug Perturbations on Single-Cell Transcriptional Responses. - Hui Liu 026; Shikai Jin (AAAI, 2025)