Prediction of glycan structures from gene expression data based on glycosyltransferase reactions. - Shin Kawano; Kosuke Hashimoto; Takashi Miyama; Susumu Goto; Minoru Kanehisa (Bioinform., 2005)

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. - Toshiaki Katayama; Mark D. Wilkinson; Rutger A. Vos; Takeshi Kawashima; Shuichi Kawashima; Mitsuteru Nakao; Yasunori Yamamoto; Hong-Woo Chun; Atsuko Yamaguchi; Shin Kawano; Jan Aerts; Kiyoko F. Aoki-Kinoshita; et al. (J. Biomed. Semant., 2011)

Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV. - Shin Kawano; Hiromasa Ono; Toshihisa Takagi; Hidemasa Bono (Briefings Bioinform., 2012)

Introducing glycomics data into the Semantic Web. - Kiyoko F. Aoki-Kinoshita; Jerven T. Bolleman; Matthew P. Campbell; Shin Kawano; Jin-Dong Kim; Thomas Lütteke; Masaaki Matsubara; Shujiro Okuda; René Ranzinger; Hiromichi Sawaki; Toshihide Shikanai; Daisuke Shinmachi; et al. (J. Biomed. Semant., 2013)

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. - Toshiaki Katayama; Mark D. Wilkinson; Kiyoko F. Aoki-Kinoshita; Shuichi Kawashima; Yasunori Yamamoto; Atsuko Yamaguchi; Shinobu Okamoto; Shin Kawano; Jin-Dong Kim; Yue Wang 040; Hongyan Wu; Yoshinobu Kano; et al. (J. Biomed. Semant., 2014)

WURCS: The Web3 Unique Representation of Carbohydrate Structures. - Kenichi Tanaka; Kiyoko F. Aoki-Kinoshita; Masaaki Kotera; Hiromichi Sawaki; Shinichiro Tsuchiya; Noriaki Fujita; Toshihide Shikanai; Masaki Kato; Shin Kawano; Issaku Yamada; Hisashi Narimatsu (J. Chem. Inf. Model., 2014)

TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model. - Shin Kawano; Tsutomu Watanabe; Sohei Mizuguchi; Norie Araki; Toshiaki Katayama; Atsuko Yamaguchi (Nucleic Acids Res., 2014)

GlycoRDF: an ontology to standardize glycomics data in RDF. - René Ranzinger; Kiyoko F. Aoki-Kinoshita; Matthew P. Campbell; Shin Kawano; Thomas Lütteke; Shujiro Okuda; Daisuke Shinmachi; Toshihide Shikanai; Hiromichi Sawaki; Philip V. Toukach; Masaaki Matsubara; Issaku Yamada; et al. (Bioinform., 2015)

DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data. - Ayako Suzuki; Hiroyuki Wakaguri; Riu Yamashita; Shin Kawano; Katsuya Tsuchihara; Sumio Sugano; Yutaka Suzuki; Kenta Nakai (Nucleic Acids Res., 2015)

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. - Eric W. Deutsch; Attila Csordas; Zhi Sun; Andrew F. Jarnuczak; Yasset Pérez-Riverol; Tobias Ternent; David S. Campbell; Manuel Bernal Llinares; Shujiro Okuda; Shin Kawano; Robert L. Moritz; Jeremy Carver; et al. (Nucleic Acids Res., 2017)

jPOSTrepo: an international standard data repository for proteomes. - Shujiro Okuda; Yu Watanabe; Yuki Moriya; Shin Kawano; Tadashi Yamamoto; Masaki Matsumoto; Tomoyo Takami; Daiki Kobayashi; Norie Araki; Akiyasu C. Yoshizawa; Tsuyoshi Tabata; Naoyuki Sugiyama; et al. (Nucleic Acids Res., 2017)

DBTSS/DBKERO for integrated analysis of transcriptional regulation. - Ayako Suzuki; Shin Kawano; Toutai Mituyama; Mikita Suyama; Yae Kanai; Katsuhiko Shirahige; Hiroyuki Sasaki; Katsushi Tokunaga; Katsuya Tsuchihara; Sumio Sugano; Kenta Nakai; Yutaka Suzuki (Nucleic Acids Res., 2018)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

The jPOST environment: an integrated proteomics data repository and database. - Yuki Moriya; Shin Kawano; Shujiro Okuda; Yu Watanabe; Masaki Matsumoto; Tomoyo Takami; Daiki Kobayashi; Yoshinori Yamanouchi; Norie Araki; Akiyasu C. Yoshizawa; Tsuyoshi Tabata; Mio Iwasaki; et al. (Nucleic Acids Res., 2019)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)

The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. - Eric W. Deutsch; Nuno Bandeira; Vagisha Sharma; Yasset Pérez-Riverol; Jeremy Carver; Deepti Jaiswal Kundu; David García-Seisdedos; Andrew F. Jarnuczak; Suresh Hewapathirana; Benjamin S. Pullman; Julie Wertz; Zhi Sun; et al. (Nucleic Acids Res., 2020)

The ProteomeXchange consortium at 10 years: 2023 update. - Eric W. Deutsch; Nuno Bandeira; Yasset Pérez-Riverol; Vagisha Sharma; Jeremy Carver; Luis Mendoza; Deepti Jaiswal Kundu; Shengbo Wang; Chakradhar Bandla; Selvakumar Kamatchinathan; Suresh Hewapathirana; Benjamin S. Pullman; et al. (Nucleic Acids Res., 2023)