A Race between Tumor Immunoescape and Genome Maintenance Selects for Optimum Levels of (epi)genetic Instability. - Shingo Iwami; Hiroshi Haeno; Franziska Michor (PLoS Comput. Biol., 2012)

Quantitative Immunology by Data Analysis Using Mathematical Models. - Shoya Iwanami; Shingo Iwami (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Modeling the efficiency of filovirus entry into cells in vitro: Effects of SNP mutations in the receptor molecule. - Kwang Su Kim; Tatsunari Kondoh; Yusuke Asai; Ayato Takada; Shingo Iwami (PLoS Comput. Biol., 2020)

Optimal Feedback Control of Cancer Chemotherapy Using Hamilton-Jacobi-Bellman Equation. - Yong Dam Jeong; Kwang Su Kim; Yunil Roh; Sooyoun Choi; Shingo Iwami; Il Hyo Jung (Complex., 2022)

Antithetic effect of interferon-α on cell-free and cell-to-cell HIV-1 infection. - Ryuichi Kumata; Shoya Iwanami; Katrina B. Mar; Yusuke Kakizoe; Naoko Misawa; Shinji Nakaoka; Yoshio Koyanagi; Alan S. Perelson; John W. Schoggins; Shingo Iwami; Kei Sato (PLoS Comput. Biol., 2022)

Contact-number-driven virus evolution: A multi-level modeling framework for the evolution of acute or persistent RNA virus infection. - Junya Sunagawa; Ryo Komorizono; Hyeongki Park; William S. Hart; Robin N. Thompson; Akiko Makino; Keizo Tomonaga; Shingo Iwami; Ryo Yamaguchi (PLoS Comput. Biol., 2023)

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers. - Kosaku Kitagawa; Kwang Su Kim; Masashi Iwamoto; Sanae Hayashi; Hyeongki Park; Takara Nishiyama; Naotoshi Nakamura; Yasuhisa Fujita; Shinji Nakaoka; Kazuyuki Aihara; Alan S. Perelson; Lena Allweiss; et al. (PLoS Comput. Biol., 2024)

Prediction of cccDNA dynamics in hepatitis B patients by a combination of serum surrogate markers. - Kwang Su Kim; Masashi Iwamoto; Kosaku Kitagawa; Hyeongki Park; Sanae Hayashi; Senko Tsukuda; Takeshi Matsui; Masanori Atsukawa; Kentaro Matsuura; Natthaya Chuaypen; Pisit Tangkijvanich; Lena Allweiss; et al. (PLoS Comput. Biol., 2025)