Prolog Computation Model BPM and its Debugger PROEDIT2. - Shinichi Morishita; Masayuki Numao (LP, 1986)

Symbolical Construction of Truth Value Domain for Logic Program. - Shinichi Morishita; Masayuki Numao; Shin'ichi Hirose (ICLP, 1987)

Lattice Programming Methodology. - Kouichi Fukunaga; Shinichi Morishita (LP, 1988)

An anternating fixpoint tailored to magic programs. - Shinichi Morishita (Workshop on Deductive Databases, JICSLP, 1992)

Avoiding Cartesian Products in Programs for Multiple Joins. - Shinichi Morishita (PODS, 1992)

An Alternating Fixpoint Tailored to Magic Programs. - Shinichi Morishita (PODS, 1993)

Design and Implementation of the Glue-Nail Database System. - Marcia A. Derr; Shinichi Morishita; Geoffrey Phipps (SIGMOD Conference, 1993)

The Glue-Nail Deductive Database System: Design, Implementation, and Evaluation - Marcia A. Derr; Shinichi Morishita; Geoffrey Phipps (VLDB J., 1994)

Interval Finding and Its Application to Data Mining. - Takeshi Fukuda; Yasuhiko Morimoto; Shinichi Morishita; Takeshi Tokuyama (ISAAC, 1996)

Data Mining Using Two-Dimensional Optimized Accociation Rules: Scheme, Algorithms, and Visualization. - Takeshi Fukuda; Yasuhiko Morimoto; Shinichi Morishita; Takeshi Tokuyama (SIGMOD Conference, 1996)

SONAR: System for Optimized Numeric AssociationRules. - Takeshi Fukuda; Yasuhiko Morimoto; Shinichi Morishita; Takeshi Tokuyama (SIGMOD Conference, 1996)

Constructing Efficient Decision Trees by Using Optimized Numeric Association Rules. - Takeshi Fukuda; Yasuhiko Morimoto; Shinichi Morishita; Takeshi Tokuyama (VLDB, 1996)

An Extension of Van Gelder's Alternating Fixpoint to Magic Programs. - Shinichi Morishita (J. Comput. Syst. Sci., 1996)

Computing Optimized Rectilinear Regions for Association Rules. - Kunikazu Yoda; Takeshi Fukuda; Yasuhiko Morimoto; Shinichi Morishita; Takeshi Tokuyama (KDD, 1997)

Avoiding Cartesian products for multiple joins. - Shinichi Morishita (J. ACM, 1997)

On Classification and Regression. - Shinichi Morishita (Discovery Science, 1998)

Weighted Majority Decision among Several Region Rules for Scientific Discovery. - Akihiro Nakaya; Hideharu Furukawa; Shinichi Morishita (Discovery Science, 1999)

Weighted Majority Decision among Region Rules for a Categorical Dataset. - Akihiro Nakaya; Shinichi Morishita (Discovery Science, 1999)

Towards Mining Gene Expression Database. - Shinichi Morishita; Teruyoshi Hishiki; Kousaku Okubo (1999 ACM SIGMOD Workshop on Research Issues in Data Mining and Knowledge Discovery, 1999)

Parallel Branch-and-Bound Graph Search for Correlated Association Rules. - Shinichi Morishita; Akihiro Nakaya (Large-Scale Parallel Data Mining, 1999)

Mining Optimized Association Rules for Numeric Attributes. - Takeshi Fukuda; Yasuhiko Morimoto; Shinichi Morishita; Takeshi Tokuyama (J. Comput. Syst. Sci., 1999)

Traversing Itemset Lattice with Statistical Metric Pruning. - Shinichi Morishita; Jun Sese (PODS, 2000)

BodyMap: a human and mouse gene expression database. - Teruyoshi Hishiki; Shoko Kawamoto; Shinichi Morishita; Kousaku Okubo (Nucleic Acids Res., 2000)

Efficient Construction of Regression Trees with Range and Region Splitting. - Yasuhiko Morimoto; Hiromu Ishii; Shinichi Morishita (Mach. Learn., 2001)

BodyMap incorporated PCR-based expression profiling data and a gene ranking system. - Jun Sese; Hitoshi Nikaidou; Shoko Kawamoto; Yuichi Minesaki; Shinichi Morishita; Kousaku Okubo (Nucleic Acids Res., 2001)

Data Mining with optimized two-dimensional association rules. - Takeshi Fukuda; Yasuhiko Morimoto; Shinichi Morishita; Takeshi Tokuyama (ACM Trans. Database Syst., 2001)

Practical Software for Aligning ESTs to Human Genome. - Jun Ogasawara; Shinichi Morishita (CPM, 2002)

Computing Optimal Hypotheses Efficiently for Boosting. - Shinichi Morishita (Progress in Discovery Science, 2002)

Answering the Most Correlated N Association Rules Efficiently. - Jun Sese; Shinichi Morishita (PKDD, 2002)

The Gene Resource Locator: gene locus maps for transcriptome analysis. - Toshihiko Honkura; Jun Ogasawara; Tomoyuki Yamada; Shinichi Morishita (Nucleic Acids Res., 2002)

KDD Cup 2001 Report. - Jie Cheng; Christos Hatzis; Hisashi Hayashi; Mark-A. Krogel; Shinichi Morishita; David Page; Jun Sese (SIGKDD Explor., 2002)

Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently. - Tomoyuki Yamada; Shinichi Morishita (CSB, 2003)

A Fast and Sensitive Algorithm for Aligning Ests to the Human Genome. - Jun Ogasawara; Shinichi Morishita (J. Bioinform. Comput. Biol., 2003)

Preface. - Setsuo Arikawa; Koichi Furukawa; Shinichi Morishita; Hiroshi Motoda (Theor. Comput. Sci., 2003)

Data Mining: The Next Generation. - Raghu Ramakrishnan 001; Rakesh Agrawal 001; Johann-Christoph Freytag; Toni Bollinger; Christopher W. Clifton; Saso Dzeroski; Jochen Hipp; Daniel A. Keim; Stefan Kramer 001; Hans-Peter Kriegel; Ulf Leser; Bing Liu 001; et al. (Perspectives Workshop: Data Mining: The Next Generation, 2004)

Itemset Classified Clustering. - Jun Sese; Shinichi Morishita (PKDD, 2004)

Constrained clusters of gene expression profiles with pathological features. - Jun Sese; Yukinori Kurokawa; Morito Monden; Kikuya Kato; Shinichi Morishita (Bioinform., 2004)

Development of Image Processing Program for Yeast Cell Morphology. - Miwaka Ohtani; Ayaka Saka; Fumi Sano; Yoshikazu Ohya; Shinichi Morishita (J. Bioinform. Comput. Biol., 2004)

Computing Highly Specific and Noise-tolerant Oligomers Efficiently. - Tomoyuki Yamada; Shinichi Morishita (J. Bioinform. Comput. Biol., 2004)

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference. - Yuki Naito; Tomoyuki Yamada; Kumiko Ui-Tei; Shinichi Morishita; Kaoru Saigo (Nucleic Acids Res., 2004)

SCMD: Saccharomyces cerevisiae Morphological Database. - Taro L. Saito; Miwaka Ohtani; Hiroshi Sawai; Fumi Sano; Ayaka Saka; Daisuke Watanabe; Masashi Yukawa; Yoshikazu Ohya; Shinichi Morishita (Nucleic Acids Res., 2004)

Report on BIOKDD04: workshop on data mining in Bioinformatics. - Mohammed Javeed Zaki; Shinichi Morishita; Isidore Rigoutsos (SIGKDD Explor., 2004)

Accelerated off-target search algorithm for siRNA. - Tomoyuki Yamada; Shinichi Morishita (Bioinform., 2005)

5'SAGE: 5'-end Serial Analysis of Gene Expression database. - Yasuhiro Kasai; Shin-ichi Hashimoto; Tomoyuki Yamada; Jun Sese; Sumio Sugano; Kouji Matsushima; Shinichi Morishita (Nucleic Acids Res., 2005)

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference. - Yuki Naito; Tomoyuki Yamada; Takahiro Matsumiya; Kumiko Ui-Tei; Kaoru Saigo; Shinichi Morishita (Nucleic Acids Res., 2005)

Data mining tools for the Saccharomyces cerevisiae morphological database. - Taro L. Saito; Jun Sese; Yoichiro Nakatani; Fumi Sano; Masashi Yukawa; Yoshikazu Ohya; Shinichi Morishita (Nucleic Acids Res., 2005)

Amoeba Join: Overcoming Structural Fluctuations in XML Data. - Taro L. Saito; Shinichi Morishita (WebDB, 2006)

PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome. - Tomoyuki Yamada; Haruhiko Soma; Shinichi Morishita (Nucleic Acids Res., 2006)

Efficient Integration of Structure Indexes of XML. - Taro L. Saito; Shinichi Morishita (DASFAA, 2007)

Relational-style XML query. - Taro L. Saito; Shinichi Morishita (SIGMOD Conference, 2008)

UTGB/medaka: genomic resource database for medaka biology. - Budrul Ahsan; Daisuke Kobayashi; Tomoyuki Yamada; Masahiro Kasahara; Shin Sasaki; Taro L. Saito; Yukinobu Nagayasu; Koichiro Doi; Yoichiro Nakatani; Wei Qu; Tomoko Jindo; Atsuko Shimada; et al. (Nucleic Acids Res., 2008)

UTGB toolkit for personalized genome browsers. - Taro L. Saito; Jun Yoshimura; Shin Sasaki; Budrul Ahsan; Atsushi Sasaki; Reginaldo Kuroshu; Shinichi Morishita (Bioinform., 2009)

siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect. - Yuki Naito; Jun Yoshimura; Shinichi Morishita; Kumiko Ui-Tei (BMC Bioinform., 2009)

MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database. - Budrul Ahsan; Taro L. Saito; Shin-ichi Hashimoto; Keigo Muramatsu; Manabu Tsuda; Atsushi Sasaki; Kouji Matsushima; Toshiro Aigaki; Shinichi Morishita (Nucleic Acids Res., 2009)

Invited: Searching massive epigenome data for evolutionarily conserved sequence motifs. - Shinichi Morishita (ICCABS, 2011)

Poster: Robust estimation of DNA methylation with local regression. - Atsushi Sasaki; Shinichi Morishita (ICCABS, 2011)

Accelerating Path-free XML Queries in RDBMS. - Hongyan Wu; Taro L. Saito; Shinichi Morishita (Inf. Media Technol., 2011)

Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing. - Koichiro Doi; Taku Monjo; Pham H. Hoang; Jun Yoshimura; Hideaki Yurino; Jun Mitsui; Hiroyuki Ishiura; Yuji Takahashi; Yaeko Ichikawa; Jun Goto; Shoji Tsuji; Shinichi Morishita (Bioinform., 2014)

A Simple but Powerful Heuristic Methodfor Accelerating $k$ -Means Clusteringof Large-Scale Data in Life Science. - Kazuki Ichikawa; Shinichi Morishita (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states. - Kazuki Ichikawa; Shinichi Morishita (BMC Genom., 2015)

Preface. - Yadong Wang; Kevin Burrage; Yunlong Liu; Shinichi Morishita; Tianhai Tian; Qinghua Jiang; Jiangning Song; Guohua Wang; Qian Zhu; Xiaohua Tony Hu (BIBM, 2016)

AgIn: measuring the landscape of CpG methylation of individual repetitive elements. - Yuta Suzuki; Jonas Korlach; Stephen W. Turner; Tatsuya Tsukahara; Junko Taniguchi; Wei Qu; Kazuki Ichikawa; Jun Yoshimura; Hideaki Yurino; Yuji Takahashi; Jun Mitsui; Hiroyuki Ishiura; et al. (Bioinform., 2016)

A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer. - Bansho Masutani; Shinichi Morishita (Bioinform., 2019)

HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C. - Ryo Nakabayashi; Shinichi Morishita (Bioinform., 2020)

Finding long tandem repeats in long noisy reads. - Shinichi Morishita; Kazuki Ichikawa; Eugene W. Myers (Bioinform., 2021)

Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencing. - Bansho Masutani; Shin-ichi Arimura; Shinichi Morishita (PLoS Comput. Biol., 2021)

Decomposing mosaic tandem repeats accurately from long reads. - Bansho Masutani; Riki Kawahara; Shinichi Morishita (Bioinform., 2023)