Effect of shapes of activation functions on predictability in the echo state network. - Hanten Chang; Shinji Nakaoka; Hiroyasu Ando (CoRR, 2019)

Computation harvesting in road traffic dynamics. - Hiroyasu Ando; T. Okamoto; Hanten Chang; T. Noguchi; Shinji Nakaoka (CoRR, 2020)

Evolving neural networks through bio-inspired parent selection in dynamic environments. - Junya Sunagawa; Ryo Yamaguchi; Shinji Nakaoka (Biosyst., 2022)

Antithetic effect of interferon-α on cell-free and cell-to-cell HIV-1 infection. - Ryuichi Kumata; Shoya Iwanami; Katrina B. Mar; Yusuke Kakizoe; Naoko Misawa; Shinji Nakaoka; Yoshio Koyanagi; Alan S. Perelson; John W. Schoggins; Shingo Iwami; Kei Sato (PLoS Comput. Biol., 2022)

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers. - Kosaku Kitagawa; Kwang Su Kim; Masashi Iwamoto; Sanae Hayashi; Hyeongki Park; Takara Nishiyama; Naotoshi Nakamura; Yasuhisa Fujita; Shinji Nakaoka; Kazuyuki Aihara; Alan S. Perelson; Lena Allweiss; et al. (PLoS Comput. Biol., 2024)

Prediction of cccDNA dynamics in hepatitis B patients by a combination of serum surrogate markers. - Kwang Su Kim; Masashi Iwamoto; Kosaku Kitagawa; Hyeongki Park; Sanae Hayashi; Senko Tsukuda; Takeshi Matsui; Masanori Atsukawa; Kentaro Matsuura; Natthaya Chuaypen; Pisit Tangkijvanich; Lena Allweiss; et al. (PLoS Comput. Biol., 2025)