Update of the FANTOM web resource: expansion to provide additional transcriptome atlases. - Marina Lizio; Imad Abugessaisa; Shuhei Noguchi; Atsushi Kondo; Akira Hasegawa; Chung-Chau Hon; Michiel J. L. de Hoon; Jessica Severin; Shinya Oki; Yoshihide Hayashizaki; Piero Carninci; Takeya Kasukawa; et al. (Nucleic Acids Res., 2019)

TRANSDIRE: data-driven direct reprogramming by a pioneer factor-guided trans-omics approach. - Ryohei Eguchi; Momoko Hamano; Michio Iwata; Toru Nakamura; Shinya Oki; Yoshihiro Yamanishi (Bioinform., 2022)

Epigenetic landscape of drug responses revealed through large-scale ChIP-seq data analyses. - Zhaonan Zou; Michio Iwata; Yoshihiro Yamanishi; Shinya Oki (BMC Bioinform., 2022)

ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data. - Zhaonan Zou; Tazro Ohta; Fumihito Miura; Shinya Oki (Nucleic Acids Res., 2022)