Umibato: estimation of time-varying microbial interaction using continuous-time regression hidden Markov model. - Shion Hosoda; Tsukasa Fukunaga; Michiaki Hamada (Bioinform., 2021)

BayesianSSA: a Bayesian statistical model based on structural sensitivity analysis for predicting responses to enzyme perturbations in metabolic networks. - Shion Hosoda; Hisashi Iwata; Takuya Miura; Maiko Tanabe; Takashi Okada; Atsushi Mochizuki; Miwa Sato (BMC Bioinform., 2024)