ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. - Haim Ashkenazy; Shiran Abadi; Eric Martz; Ofer Chay; Itay Mayrose; Tal Pupko; Nir Ben-Tal (Nucleic Acids Res., 2016)

A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action. - Shiran Abadi; Winston X. Yan; David Amar; Itay Mayrose (PLoS Comput. Biol., 2017)

Prediction of synonymous corrections by the BE-FF computational tool expands the targeting scope of base editing. - Roy Rabinowitz; Shiran Abadi; Shiri Almog; Daniel Offen (Nucleic Acids Res., 2020)

Learning evolutionary and genomic processes from massive nucleotide data - Shiran Abadi (2020)