Proteome scanning to predict PDZ domain interactions using support vector machines. - Shirley Hui; Gary D. Bader (BMC Bioinform., 2010)

Predicting PDZ domain mediated protein interactions from structure. - Shirley Hui; Xiang Xing; Gary D. Bader (BMC Bioinform., 2013)

netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks. - Shraddha Pai; Philipp Weber; Ruth Isserlin; Hussam Kaka; Shirley Hui; Muhammad Ahmad Shah; Luca Giudice; Rosalba Giugno; Anne Krogh Nøhr; Jan Baumbach; Gary D. Bader (F1000Research, 2020)