Designing HeartCare: custom computerized home care for patients recovering from CABG surgery. - Patricia F. Brennan; Barrett S. Caldwell; Shirley Moore; N. Sreenath; Josette Jones (AMIA, 1998)

Using WebTV to Deliver Health Information Into the Home: Experiences, Successes and Regrets. - Patricia Flatley Brennan; Shirley Moore; Barrett S. Caldwell (AMIA, 1999)

End-user Tools for Application Performance Analysis Using Hardware Counters. - Kevin S. London; Jack J. Dongarra; Shirley Moore; Philip Mucci; Keith Seymour; T. Spencer (PDCS, 2001)

Review of Performance Analysis Tools for MPI Parallel Programs. - Shirley Moore; David Cronk; Kevin S. London; Jack J. Dongarra (PVM/MPI, 2001)

Numerical Libraries and Tools for Scalable Parallel Cluster Computing. - Jack J. Dongarra; Shirley Moore; Anne E. Trefethen (Int. J. High Perform. Comput. Appl., 2001)

A Comparison of Counting and Sampling Modes of Using Performance Monitoring Hardware. - Shirley Moore (International Conference on Computational Science (2), 2002)

Active netlib: an active mathematical software collection for inquiry-based computational science & engineering education. - Shirley Moore; A. Jerry Baker; Jack J. Dongarra (JCDL, 2002)

Active Netlib: An Active Mathematical Software Collection for Inquiry-based Computational Science and Engineering Education. - Shirley Moore; A. Jerry Baker; Jack J. Dongarra; Christian Halloy; Chung Ng (J. Digit. Inf., 2002)

Performance Instrumentation and Measurement for Terascale Systems. - Jack J. Dongarra; Allen D. Malony; Shirley Moore; Philip Mucci; Sameer Shende (International Conference on Computational Science, 2003)

Experiences and Lessons Learned with a Portable Interface to Hardware Performance Counters. - Jack J. Dongarra; Kevin S. London; Shirley Moore; Philip Mucci; Daniel Terpstra; Haihang You; Min Zhou (IPDPS, 2003)

Efficient Pattern Search in Large Traces Through Successive Refinement. - Felix Wolf 001; Bernd Mohr; Jack J. Dongarra; Shirley Moore (Euro-Par, 2004)

Accurate Cache and TLB Characterization Using Hardware Counters. - Jack J. Dongarra; Shirley Moore; Philip Mucci; Keith Seymour; Haihang You (International Conference on Computational Science, 2004)

An Algebra for Cross-Experiment Performance Analysis. - Fengguang Song; Felix Wolf 001; Nikhil Bhatia; Jack J. Dongarra; Shirley Moore (ICPP, 2004)

One Size Does Not Fit All: Using Qualitative Methods to Inform the Development of an Internet Portal for Multiple Sclerosis Patients. - Ashish Atreja; Neil Mehta; Deborah Miller; Shirley Moore; Karen Nichols; Holly Miller; C. Martin Harris (AMIA, 2005)

Automatic Experimental Analysis of Communication Patterns in Virtual Topologies. - Nikhil Bhatia; Fengguang Song; Felix Wolf 001; Jack J. Dongarra; Bernd Mohr; Shirley Moore (ICPP, 2005)

A Scalable Approach to MPI Application Performance Analysis. - Shirley Moore; Felix Wolf 001; Jack J. Dongarra; Sameer Shende; Allen D. Malony; Bernd Mohr (PVM/MPI, 2005)

Large Event Traces in Parallel Performance Analysis. - Felix Wolf 001; Felix Freitag; Bernd Mohr; Shirley Moore; Brian J. N. Wylie (ARCS Workshops, 2006)

Performance Instrumentation and Compiler Optimizations for MPI/OpenMP Applications. - Oscar R. Hernandez; Fengguang Song; Barbara M. Chapman; Jack J. Dongarra; Bernd Mohr; Shirley Moore; Felix Wolf 001 (IWOMP, 2006)

PAPI users group - PAPI users group. - Philip Mucci; Shirley Moore (SC, 2006)

Feedback-directed thread scheduling with memory considerations. - Fengguang Song; Shirley Moore; Jack J. Dongarra (HPDC, 2007)

L2 Cache Modeling for Scientific Applications on Chip Multi-Processors. - Fengguang Song; Shirley Moore; Jack J. Dongarra (ICPP, 2007)

Continuous Runtime Profiling of OpenMP Applications. - Karl Fürlinger; Shirley Moore (PARCO, 2007)

Scalability and Usability of HPC Programming Tools. - Felix Wolf 001; Daniel Becker 001; Bettina Krammer; Dieter an Mey; Shirley Moore; Matthias S. Müller (PARCO, 2007)

Automatic analysis of inefficiency patterns in parallel applications. - Felix Wolf 001; Bernd Mohr; Jack J. Dongarra; Shirley Moore (Concurr. Comput. Pract. Exp., 2007)

OpenMP-centric performance analysis of hybrid applications. - Karl Fürlinger; Shirley Moore (CLUSTER, 2008)

Enabling Data Structure Oriented Performance Analysis with Hardware Performance Counter Support. - Karl Fürlinger; Daniel Terpstra; Haihang You; Philip Mucci; Shirley Moore (Euro-Par Workshops, 2008)

Detection and Analysis of Iterative Behavior in Parallel Applications. - Karl Fürlinger; Shirley Moore (ICCS (3), 2008)

Visualizing the Program Execution Control Flow of OpenMP Applications. - Karl Fürlinger; Shirley Moore (IWOMP, 2008)

Usage of the SCALASCA toolset for scalable performance analysis of large-scale parallel applications. - Felix Wolf 001; Brian J. N. Wylie; Erika Ábrahám; Daniel Becker 001; Wolfgang Frings; Karl Fürlinger; Markus Geimer; Marc-André Hermanns; Bernd Mohr; Shirley Moore; Matthias Pfeifer; Zoltán Szebenyi (Parallel Tools Workshop, 2008)

Analytical modeling and optimization for affinity based thread scheduling on multicore systems. - Fengguang Song; Shirley Moore; Jack J. Dongarra (CLUSTER, 2009)

A Scalable Non-blocking Multicast Scheme for Distributed DAG Scheduling. - Fengguang Song; Jack J. Dongarra; Shirley Moore (ICCS (1), 2009)

Capturing and Analyzing the Execution Control Flow of OpenMP Applications. - Karl Fürlinger; Shirley Moore (Int. J. Parallel Program., 2009)

Recording the control flow of parallel applications to determine iterative and phase-based behavior. - Karl Fürlinger; Shirley Moore (Future Gener. Comput. Syst., 2010)

Evaluation of the HPC Challenge Benchmarks in Virtualized Environments. - Piotr Luszczek; Eric Meek; Shirley Moore; Daniel Terpstra; Vincent M. Weaver; Jack J. Dongarra (Euro-Par Workshops (2), 2011)

Introduction. - Shirley Moore; Derrick Kondo; Brian J. N. Wylie; Giuliano Casale (Euro-Par (1), 2011)

Poster: new features of the PAPI hardware counter library. - Shirley Moore; Daniel Terpstra; Vincent M. Weaver; Heike Jagode; James Ralph; Jack J. Dongarra (SC Companion, 2011)

Autotuned parallel I/O for highly scalable biosequence analysis. - Haihang You; Bhanu Rekapalli; Qing Liu; Shirley Moore (TG, 2011)

Energy and performance characteristics of different parallel implementations of scientific applications on multicore systems. - Charles W. Lively; Xingfu Wu; Valerie E. Taylor; Shirley Moore; Hung-Ching Chang; Kirk W. Cameron (Int. J. High Perform. Comput. Appl., 2011)

User-defined events for hardware performance monitoring. - Shirley Moore; James Ralph (ICCS, 2011)

PAPI-V: Performance Monitoring for Virtual Machines. - Matt Johnson 002; Heike McCraw; Shirley Moore; Philip J. Mucci; John Nelson; Daniel Terpstra; Vincent M. Weaver; Tushar Mohan (ICPP Workshops, 2012)

Measuring Energy and Power with PAPI. - Vincent M. Weaver; Matt Johnson 002; Kiran Kasichayanula; James Ralph; Piotr Luszczek; Daniel Terpstra; Shirley Moore (ICPP Workshops, 2012)

Refactoring and automated performance tuning of computational chemistry application codes. - Shirley Moore (WSC, 2012)

Achieve better performance with PEAK on XSEDE resources. - Bilel Hadri; Haihang You; Shirley Moore (XSEDE, 2012)

Power-aware predictive models of hybrid (MPI/OpenMP) scientific applications on multicore systems. - Charles W. Lively; Xingfu Wu; Valerie E. Taylor; Shirley Moore; Hung-Ching Chang; Chun-Yi Su; Kirk W. Cameron (Comput. Sci. Res. Dev., 2012)

Non-determinism and overcount on modern hardware performance counter implementations. - Vincent M. Weaver; Daniel Terpstra; Shirley Moore (ISPASS, 2013)

PAPI 5: Measuring power, energy, and the cloud. - Vincent M. Weaver; Daniel Terpstra; Heike McCraw; Matt Johnson 002; Kiran Kasichayanula; James Ralph; John Nelson; Philip Mucci; Tushar Mohan; Shirley Moore (ISPASS, 2013)

MuMMI: Multiple Metrics Modeling Infrastructure. - Xingfu Wu; Valerie E. Taylor; Charles W. Lively; Hung-Ching Chang; Bo Li 032; Kirk W. Cameron; Daniel Terpstra; Shirley Moore (Parallel Tools Workshop, 2013)

MuMMI: Multiple Metrics Modeling Infrastructure. - Xingfu Wu; Charles W. Lively; Valerie E. Taylor; Hung-Ching Chang; Chun-Yi Su; Kirk W. Cameron; Shirley Moore; Daniel Terpstra; Vincent M. Weaver (SNPD, 2013)

MuMMI: multiple metrics modeling infrastructure for exploring performance and power modeling. - Xingfu Wu; Hung-Ching Chang; Shirley Moore; Valerie E. Taylor; Chun-Yi Su; Daniel Terpstra; Charles W. Lively; Kirk W. Cameron; Chee Wai Lee (XSEDE, 2013)

E-AMOM: an energy-aware modeling and optimization methodology for scientific applications. - Charles W. Lively; Valerie E. Taylor; Xingfu Wu; Hung-Ching Chang; Chun-Yi Su; Kirk W. Cameron; Shirley Moore; Daniel Terpstra (Comput. Sci. Res. Dev., 2014)

Using Software Engineering Methodologies to Port a Scientific Code to GPUs: Experiences and Lessons Learned. - Madhu Hari; Shirley Moore (SE4HPCS@ICSE, 2015)

Iso-Power-Efficiency: An Approach to Scaling Application Codes with a Power Budget. - Rogelio Long; Shirley Moore; Barry Rountree (IPDPS Workshops, 2015)

A prototype sampling interface for PAPI. - Ivonne López; Shirley Moore; Vincent M. Weaver (XSEDE, 2015)

POSITION PAPER: Countering the Noise-Induced Critical Path Problem. - Rogelio Long; Shirley Moore (IPDPS Workshops, 2016)

Achieving Safety for Power Shifting in Overprovisioned High Performance Computing Systems. - Shirley Moore (IPDPS Workshops, 2016)

A Flipped Classroom Approach to Teaching Concurrency and Parallelism. - Shirley Moore; Steven R. Dunlop (IPDPS Workshops, 2016)

Performance analysis and optimization of the RAMPAGE metal alloy potential generation software. - Philip C. Roth; Hongzhang Shan; David Riegner; Nikolas Antolin; Sarat Sreepathi; Leonid Oliker; Samuel Williams 001; Shirley Moore; Wolfgang Windl (SEPS@SPLASH, 2017)

Durango: Scalable Synthetic Workload Generation for Extreme-Scale Application Performance Modeling and Simulation. - Christopher D. Carothers; Jeremy S. Meredith; Mark P. Blanco; Jeffrey S. Vetter; Misbah Mubarak; Justin M. LaPre; Shirley Moore (SIGSIM-PADS, 2017)

Analyzing the suitability of contemporary 3D-stacked PIM architectures for HPC scientific applications. - Ivy Bo Peng; Jeffrey S. Vetter; Shirley Moore; Joydeep Rakshit; Stefano Markidis (CF, 2019)

Future Directions of the Cyberinfrastructure for Sustained Scientific Innovation (CSSI) Program. - Ritu Arora; Xiaosong Li; Bonnie Hurwitz; Daniel Fay; Dhabaleswar K. Panda 001; Edward F. Valeev; Shaowen Wang 001; Shirley Moore; Sunita Chandrasekaran; Ting Cao; Holly Bik; Matthew Curry; et al. (CoRR, 2020)