PathBuilder - open source software for annotating and developing pathway resources. - Kumaran Kandasamy; Shivakumar Keerthikumar; Rajesh Raju; T. S. Keshava Prasad; Y. L. Ramachandra; S. Sujatha Mohan; Akhilesh Pandey (Bioinform., 2009)

Human Proteinpedia: a unified discovery resource for proteomics research. - Kumaran Kandasamy; Shivakumar Keerthikumar; Renu Goel; Suresh Mathivanan; Nandini Patankar; Beema Shafreen; Santosh Renuse; Harsh Pawar; Y. L. Ramachandra; Pradip Kumar Acharya; Prathibha Ranganathan; Raghothama Chaerkady; et al. (Nucleic Acids Res., 2009)

RAPID: Resource of Asian Primary Immunodeficiency Diseases. - Shivakumar Keerthikumar; Rajesh Raju; Kumaran Kandasamy; Atsushi Hijikata; Subhashri Ramabadran; Lavanya Balakrishnan; Mukhtar Ahmed; Sandhya Rani; Lakshmi Dhevi N. Selvan; Devi S. Somanathan; Somak Ray; Mitali Bhattacharjee; et al. (Nucleic Acids Res., 2009)

Human Protein Reference Database - 2009 update. - T. S. Keshava Prasad; Renu Goel; Kumaran Kandasamy; Shivakumar Keerthikumar; Sameer Kumar 002; Suresh Mathivanan; Deepthi Telikicherla; Rajesh Raju; Beema Shafreen; Abhilash Venugopal; Lavanya Balakrishnan; Arivusudar Marimuthu; et al. (Nucleic Acids Res., 2009)

Extending gene ontology in the context of extracellular RNA and vesicle communication. - Kei-Hoi Cheung; Shivakumar Keerthikumar; Paola Roncaglia; Sai Lakshmi Subramanian; Matthew E. Roth; Monisha Samuel; Sushma Anand; Lahiru Gangoda; Stephen Gould; Roger Alexander; David Galas; Mark B. Gerstein; et al. (J. Biomed. Semant., 2016)

Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues. - David Chisanga; Shivakumar Keerthikumar; Mohashin Pathan; Dinuka Ariyaratne; Hina Kalra; Stephanie Boukouris; Nidhi Abraham Mathew; Haidar Al Saffar; Lahiru Gangoda; Ching-Seng Ang; Oliver M. Sieber; John M. Mariadason; et al. (Nucleic Acids Res., 2016)

Powerful differential expression analysis incorporating network topology for next-generation sequencing data. - Malathi S. I. Dona; Luke A. Prendergast; Suresh Mathivanan; Shivakumar Keerthikumar; Agus Salim (Bioinform., 2017)

Integration of heterogeneous 'omics' data using semi-supervised network labelling to identify essential genes in colorectal cancer. - David Chisanga; Shivakumar Keerthikumar; Suresh Mathivanan; Naveen K. Chilamkurti (Comput. Electr. Eng., 2018)