An Iteration Method for Identifying Yeast Essential Proteins From Weighted PPI Network Based on Topological and Functional Features of Proteins. - Shiyuan Li 001; Zhiping Chen; Xin He; Zhen Zhang 033; Tingrui Pei; Yihong Tan; Lei Wang 069 (IEEE Access, 2020)

An iteration model for identifying essential proteins by combining comprehensive PPI network with biological information. - Shiyuan Li 001; Zhen Zhang 033; Xueyong Li; Yihong Tan; Lei Wang 069; Zhiping Chen (BMC Bioinform., 2021)

Noise-Resilient Unsupervised Graph Representation Learning via Multi-Hop Feature Quality Estimation. - Shiyuan Li 001; Yixin Liu 001; Qingfeng Chen; Geoffrey I. Webb; Shirui Pan (CIKM, 2024)

ARC: A Generalist Graph Anomaly Detector with In-Context Learning. - Yixin Liu 001; Shiyuan Li 001; Yu Zheng 013; Qingfeng Chen; Chengqi Zhang; Shirui Pan (NeurIPS, 2024)

Bi-SGTAR: A simple yet efficient model for circRNA-disease association prediction based on known association pair only. - Shiyuan Li 001; Qingfeng Chen; Zhixian Liu; Shirui Pan; Shichao Zhang 001 (Knowl. Based Syst., 2024)

FreeGAD: A Training-Free yet Effective Approach for Graph Anomaly Detection. - Yunfeng Zhao; Yixin Liu 001; Shiyuan Li 001; Qingfeng Chen; Yu Zheng 013; Shirui Pan (CIKM, 2025)

Uncertainty-Aware Graph Neural Networks: A Multi-Hop Evidence Fusion Approach. - Qingfeng Chen; Shiyuan Li 001; Yixin Liu 001; Shirui Pan; Geoffrey I. Webb; Shichao Zhang 001 (CoRR, 2025)

Graph-Augmented Large Language Model Agents: Current Progress and Future Prospects. - Yixin Liu 001; Guibin Zhang; Kun Wang 056; Shiyuan Li 001; Shirui Pan (CoRR, 2025)

Uncertainty-Aware Graph Neural Networks: A Multihop Evidence Fusion Approach. - Qingfeng Chen; Shiyuan Li 001; Yixin Liu 001; Shirui Pan; Geoffrey I. Webb; Shichao Zhang 001 (IEEE Trans. Neural Networks Learn. Syst., 2025)

Assemble Your Crew: Automatic Multi-agent Communication Topology Design via Autoregressive Graph Generation. - Shiyuan Li 001; Yixin Liu 001; Qingsong Wen; Chengqi Zhang; Shirui Pan (AAAI, 2026)

OFA-MAS: One-for-All Multi-Agent System Topology Design based on Mixture-of-Experts Graph Generative Models. - Shiyuan Li 001; Yixin Liu 001; Yu Zheng 013; Mei Li; Quoc Viet Hung Nguyen; Shirui Pan (WWW, 2026)

Graph-Augmented Large Language Model Agents: Current Progress and Future Prospects. - Yixin Liu 001; Guibin Zhang; Kun Wang 056; Shiyuan Li 001; Shirui Pan; Bo An 001 (IEEE Intell. Syst., 2026)

LiSA: A linear graph transformer framework with sample aggregation. - Qian Wang; Qingfeng Chen; Shiyuan Li 001; Shirui Pan (Knowl. Based Syst., 2026)

Beyond a Single Perspective: Text Anomaly Detection with Multi-View Language Representations. - Yixin Liu 001; Kehan Yan; Shiyuan Li 001; Qingfeng Chen; Shirui Pan (CoRR, 2026)

Towards One-for-All Anomaly Detection for Tabular Data. - Shiyuan Li 001; Yixin Liu 001; Yu Zheng 013; Xiaofeng Cao 002; Shirui Pan; Heng Tao Shen (CoRR, 2026)

GoAgent: Group-of-Agents Communication Topology Generation for LLM-based Multi-Agent Systems. - Hongjiang Chen 001; Xin Zheng 008; Yixin Liu 001; Pengfei Jiao; Shiyuan Li 001; Huan Liu 001; Zhidong Zhao; Ziqi Xu 001; Ibrahim Khalil 001; Shirui Pan (CoRR, 2026)

FedCIGAR: A Personalized Reconstruction Approach for Federated Graph-level Anomaly Detection. - Yunfeng Zhao; Yixin Liu 001; Qingfeng Chen; Shiyuan Li 001; Yue Tan; Shirui Pan (CoRR, 2026)

From Few-Shot to Zero-Shot: Towards Generalist Graph Anomaly Detection. - Yixin Liu 001; Shiyuan Li 001; Yu Zheng 013; Qingfeng Chen; Chengqi Zhang; Philip S. Yu; Shirui Pan (IEEE Trans. Knowl. Data Eng., 2026)