TAPPA: topological analysis of pathway phenotype association. - Shouguo Gao; Xujing Wang (Bioinform., 2007)

Global analysis of phase locking in gene expression during cell cycle: the potential in network modeling. - Shouguo Gao; John L. Hartman IV; Justin L. Carter; Martin J. Hessner; Xujing Wang (BMC Syst. Biol., 2010)

Topology-based scoring method for identification of responsive protein-protein interaction subnetwork. - Shouguo Gao; Xujing Wang (BIBM Workshops, 2011)

Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data. - Shouguo Gao; Xujing Wang (BMC Bioinform., 2011)

Identification of highly synchronized subnetworks from gene expression data. - Shouguo Gao; Xujing Wang (BMC Bioinform., 2013)

CAISC: A software to integrate copy number variations and single nucleotide mutations for genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing. - Jeerthi Kannan; Liza Mathews; Zhijie Wu; Neal S. Young; Shouguo Gao (BMC Bioinform., 2022)