Stochastic modeling of reaction kinetics in biosensors using the Fokker Planck equation. - Shreepriya Das; Haris Vikalo; Arjang Hassibi (GENSiPS, 2009)

Model-based sequential base calling for Illumina sequencing. - Shreepriya Das; Haris Vikalo; Arjang Hassibi (GENSiPS, 2010)

Base-calling for Illumina's next-generation DNA sequencing systems via Viterbi algorithm. - Shreepriya Das; Haris Vikalo (Allerton, 2011)

OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing. - Shreepriya Das; Haris Vikalo (Bioinform., 2012)

Base calling for high-throughput short-read sequencing: dynamic programming solutions. - Shreepriya Das; Haris Vikalo (BMC Bioinform., 2013)

Optimal haplotype assembly with statistical pruning. - Shreepriya Das; Haris Vikalo (GlobalSIP, 2014)

Optimal Haplotype Assembly via a Branch-and-Bound Algorithm. - Shreepriya Das; Haris Vikalo (IEEE Trans. Mol. Biol. Multi Scale Commun., 2017)