Systemic remodeling of the redox regulatory network due to RNAi perturbations of glutaredoxin 1, thioredoxin 1, and glucose-6-phosphate dehydrogenase. - Linda E. Kippner; Nnenna A. Finn; Shreya Shukla; Melissa L. Kemp (BMC Syst. Biol., 2011)

IQCELL: A platform for predicting the effect of gene perturbations on developmental trajectories using single-cell RNA-seq data. - Tiam Heydari; Matthew A. Langley; Cynthia L. Fisher; Daniel Aguilar-Hidalgo; Shreya Shukla; Ayako Yachie-Kinoshita; Michael Hughes; Kelly M. McNagny; Peter W. Zandstra (PLoS Comput. Biol., 2022)

Towards Making Flowchart Images Machine Interpretable. - Shreya Shukla; Prajwal Gatti; Yogesh Kumar 004; Vikash Yadav; Anand Mishra 001 (ICDAR (5), 2023)

PatentLMM: Large Multimodal Model for Generating Descriptions for Patent Figures. - Shreya Shukla; Nakul Sharma; Manish Gupta 001; Anand Mishra 001 (AAAI, 2025)

Thought2Text: Text Generation from EEG Signal using Large Language Models (LLMs). - Abhijit Mishra; Shreya Shukla; Jose Torres; Jacek Gwizdka; Shounak Roychowdhury (NAACL (Findings), 2025)

A Survey on Bridging EEG Signals and Generative AI: From Image and Text to Beyond. - Shreya Shukla; Jose Torres; Abhijit Mishra; Jacek Gwizdka; Shounak Roychowdhury (CoRR, 2025)