Comparative Exon Prediction based on Heuristic Coding Region Alignment. - Shu Ju Hsieh; Yun Sheng Chung; Chuan Yi Tang; Chun-Yuan Lin (ISPAN, 2005)

EXONSCAN: EXON prediction with Signal detection and Coding region AligNment in homologous sequences. - Shu Ju Hsieh; Yun Sheng Chung; Chun-Yuan Lin; Chuan Yi Tang (SAC, 2005)

Comparative Gene Prediction Based on Gene Structure Conservation. - Shu Ju Hsieh; Chun-Yuan Lin; Ning Han Liu; Chuan Yi Tang (PRIB, 2006)

GeneAlign: a coding exon prediction tool based on phylogenetical comparisons. - Shu Ju Hsieh; Chun-Yuan Lin; Ning Han Liu; Wei Yuan Chow; Chuan Yi Tang (Nucleic Acids Res., 2006)

CORAL-M: Heuristic coding region alignment method for multiple genome sequences. - Che-Lun Hung; Chun-Yuan Lin; Shih-Cheng Chang; Yeh-Ching Chung; Shu Ju Hsieh; Chuan Yi Tang; Yaw-Ling Lin (BIBM Workshops, 2010)

Multiple genome sequences alignment algorithm based on coding regions. - Che-Lun Hung; Chun-Yuan Lin; Shih-Cheng Chang; Yeh-Ching Chung; Shu Ju Hsieh; Chuan Yi Tang; Yaw-Ling Lin (Int. J. Comput. Biol. Drug Des., 2011)