Disease association tests by inferring ancestral haplotypes using a hidden markov model. - Shu-Yi Su; David J. Balding; Lachlan J. M. Coin (Bioinform., 2008)

Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions. - Shu-Yi Su; Jonathan White; David J. Balding; Lachlan J. M. Coin (BMC Bioinform., 2008)

Inferring combined CNV/SNP haplotypes from genotype data. - Shu-Yi Su; Julian E. Asher; Marjo-Riitta Järvelin; Philippe Froguel; Alexandra I. F. Blakemore; David J. Balding; Lachlan J. M. Coin (Bioinform., 2010)

Detection of identity by descent using next-generation whole genome sequencing data. - Shu-Yi Su; Jay Kasberger; Sergio Baranzini; William Byerley; Wilson Liao; Jorge Oksenberg; Elliott Sherr; Eric Jorgenson (BMC Bioinform., 2012)

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers. - Charles Girardot; Jelle Scholtalbers; Sajoscha Sauer; Shu-Yi Su; Eileen E. M. Furlong (BMC Bioinform., 2016)