A program for predicting significant RNA secondary structures. - Shu-Yun Le; Jih-Hsiang Chen; Kathleen M. Currey; Jacob V. Maizel (Comput. Appl. Biosci., 1988)

An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors. - Shu-Yun Le; Jih-Hsiang Chen; Ruth Nussinov; Jacob V. Maizel (Comput. Appl. Biosci., 1988)

RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. - Shu-Yun Le; John Owens; Ruth Nussinov; Jih-Hsiang Chen; Bruce A. Shapiro; Jacob V. Maizel (Comput. Appl. Biosci., 1989)

A computational procedure for assessing the significance of RNA secondary structure. - Jih-Hsiang Chen; Shu-Yun Le; Bruce A. Shapiro; Kathleen M. Currey; Jacob V. Maizel (Comput. Appl. Biosci., 1990)

Detection of unusual RNA folding regions in HIV and SIV sequences. - Shu-Yun Le; Jih-Hsiang Chen; Jacob V. Maizel (Comput. Appl. Biosci., 1991)

A procedure for RNA pseudoknot prediction. - Jih-Hsiang Chen; Shu-Yun Le; Jacob V. Maizel (Comput. Appl. Biosci., 1992)

Optimization of an RNA Folding Algorithm for Parallel Architectures. - Jih-Hsiang Chen; Shu-Yun Le; Bruce A. Shapiro; Jacob V. Maizel (Parallel Comput., 1998)

A new algorithm for computing similarity between RNA structures. - Gregory D. Collins; Shu-Yun Le; Kaizhong Zhang (Inf. Sci., 2001)

A data mining approach to discover unusual folding regions in genome sequences. - Shu-Yun Le; Wei-Min Liu; Jacob V. Maizel (Knowl. Based Syst., 2002)

Statistical Inference for Well-ordered Structures in Nucleotide Sequences. - Shu-Yun Le; Jih-Hsiang Chen; Jacob V. Maizel (CSB, 2003)

Discovering well-ordered folding patterns in nucleotide sequences. - Shu-Yun Le; Jih-Hsiang Chen; Danielle Konings; Jacob V. Maizel (Bioinform., 2003)

An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes. - Shu-Yun Le; Jacob V. Maizel Jr.; Kaizhong Zhang (CSB, 2004)

Finding Conserved Well-Ordered RNA Structures In Genomic Sequences. - Shu-Yun Le; Jacob V. Maizel Jr.; Kaizhong Zhang (Int. J. Comput. Intell. Appl., 2004)

Statistical Inference on Distinct RNA Stem-Loops in Genomic Sequences. - Shu-Yun Le; Jih-Hsiang Chen (BIRD, 2007)

Characterization of structural features for small regulatory RNAs in Escherichia coli genomes. - Shu-Yun Le; Bruce A. Shapiro (BIBM, 2010)

Data mining of functional RNA structures in genomic sequences. - Shu-Yun Le; Bruce A. Shapiro (WIREs Data Mining Knowl. Discov., 2011)