LncPred-IEL: A Long Non-coding RNA Prediction Method using Iterative Ensemble Learning. - Yanzhen Xu; Xiaohan Zhao; Shuai Liu 017; Shichao Liu 002; Yanqing Niu; Wen Zhang 008; Leyi Wei (BIBM, 2019)

PtLnc-BXE: Prediction of plant lncRNAs using a Bagging-XGBoost-ensemble method with multiple features. - Guangyan Zhang; Ziru Liu; Jichen Dai; Zilan Yu; Shuai Liu 017; Wen Zhang 008 (CoRR, 2019)

ItLnc-BXE: A Bagging-XGBoost-Ensemble Method With Comprehensive Sequence Features for Identification of Plant lncRNAs. - Guangyan Zhang; Ziru Liu; Jichen Dai; Zilan Yu; Shuai Liu 017; Wen Zhang 008 (IEEE Access, 2020)

CSGNN: Contrastive Self-Supervised Graph Neural Network for Molecular Interaction Prediction. - Chengshuai Zhao; Shuai Liu 017; Feng Huang 004; Shichao Liu 002; Wen Zhang 008 (IJCAI, 2021)

Predicting Coding Potential of RNA Sequences by Solving Local Data Imbalance. - Xiangan Chen; Shuai Liu 017; Wen Zhang 008 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

EPIHC: Improving Enhancer-Promoter Interaction Prediction by Using Hybrid Features and Communicative Learning. - Shuai Liu 017; Xinran Xu; Zhihao Yang; Xiaohan Zhao; Shichao Liu 002; Wen Zhang 008 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)