Implementation of Training Convolutional Neural Networks. - Tianyi Liu; Shuangsang Fang; Yuehui Zhao; Peng Wang; Jun Zhang (CoRR, 2015)

NONCODE 2016: an informative and valuable data source of long non-coding RNAs. - Yi Zhao 013; Hui Li 038; Shuangsang Fang; Yue Kang; Wei Wu 025; Yajing Hao 001; Ziyang Li; Dechao Bu; Ninghui Sun; Michael Q. Zhang; Runsheng Chen (Nucleic Acids Res., 2016)

Identification and function annotation of long intervening noncoding RNAs. - Haitao Luo; Dechao Bu; Liang Sun; Shuangsang Fang; Zhiyong Liu; Yi Zhao 013 (Briefings Bioinform., 2017)

NONCODEV5: a comprehensive annotation database for long non-coding RNAs. - Shuangsang Fang; LiLi Zhang 007; Jincheng Guo; Yiwei Niu; Yang Wu; Hui Li 038; Lianhe Zhao; Xiyuan Li; XueYi Teng; XianHui Sun; Liang Sun; Michael Q. Zhang; et al. (Nucleic Acids Res., 2018)

CNIT: a fast and accurate web tool for identifying protein-coding and long non-coding transcripts based on intrinsic sequence composition. - Jincheng Guo; Shuangsang Fang; Yang Wu; Jianhua Zhang; Yang Chen; Jing Liu; Bo Wu; Jiarui Wu; Enmin Li; Liyan Xu; Liang Sun; Yi Zhao 013 (Nucleic Acids Res., 2019)

SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping. - Yang Wu; Feilong Zhang; Kuo Yang 001; Shuangsang Fang; Dechao Bu; Hui Li 038; Liang Sun; Hairuo Hu; Kuo Gao; Wei Wang 269; Xuezhong Zhou; Yi Zhao 013; et al. (Nucleic Acids Res., 2019)

KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis. - Dechao Bu; Haitao Luo; Peipei Huo; Zhihao Wang; Shan Zhang; Zihao He; Yang Wu; Lianhe Zhao; Jingjia Liu; Jincheng Guo; Shuangsang Fang; Wanchen Cao; et al. (Nucleic Acids Res., 2021)

HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine. - Shuangsang Fang; Lei Dong; Liu Liu; Jincheng Guo; Lianhe Zhao; Jiayuan Zhang; Dechao Bu; Xinkui Liu; Peipei Huo; Wanchen Cao; Qiongye Dong; Jiarui Wu; et al. (Nucleic Acids Res., 2021)

NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. - Lianhe Zhao; Jiajia Wang; Yanyan Li; Tingrui Song; Yang Wu; Shuangsang Fang; Dechao Bu; Hui Li 038; Liang Sun; Dong Pei; Yu Zheng 030; Jianqin Huang; et al. (Nucleic Acids Res., 2021)

TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse. - Yuexin Zhang; Chao Song; Yimeng Zhang; Yuezhu Wang; Chenchen Feng; Jiaxin Chen; Ling Wei; Qi Pan; Desi Shang; Yanbing Zhu; Jiang Zhu; Shuangsang Fang; et al. (Nucleic Acids Res., 2022)

Computational Approaches and Challenges in Spatial Transcriptomics. - Shuangsang Fang; Bichao Chen; Yong Zhang 036; Haixi Sun; Longqi Liu; Shiping Liu; Yuxiang Li; Xun Xu (Genom. Proteom. Bioinform., 2023)

BioLLM: A standardized framework for integrating and benchmarking single-cell foundation models. - Ping Qiu; Qianqian Chen; Hua Qin; Shuangsang Fang; Yilin Zhang; Yanlin Zhang; Tianyi Xia; Lei Cao; Yong Zhang; Xiaodong Fang; Yuxiang Li; Luni Hu (Patterns, 2025)