Computational identification of repurposed drugs against viruses causing epidemics and pandemics via drug-target network analysis. - Akanksha Rajput; Anamika Thakur; Amber Rastogi; Shubham Choudhury; Manoj Kumar 003 (Comput. Biol. Medicine, 2021)

DMPPred: a tool for identification of antigenic regions responsible for inducing type 1 diabetes mellitus. - Nishant Kumar; Sumeet Patiyal; Shubham Choudhury; Ritu Tomer; Anjali Dhall; Gajendra P. S. Raghava (Briefings Bioinform., 2023)

TNFepitope: A webserver for the prediction of TNF-α inducing epitopes. - Anjali Dhall; Sumeet Patiyal; Shubham Choudhury; Shipra Jain; Kashish Narang; Gajendra P. S. Raghava (Comput. Biol. Medicine, 2023)

ToxinPred 3.0: An improved method for predicting the toxicity of peptides. - Anand Singh Rathore; Shubham Choudhury; Akanksha Arora; Purva Tijare; Gajendra P. S. Raghava (Comput. Biol. Medicine, 2024)

MRSLpred - a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale. - Shubham Choudhury; Nisha Bajiya; Sumeet Patiyal; Gajendra P. S. Raghava (Frontiers Bioinform., 2024)