Mal-Light: Enhancing Lysine Malonylation Sites Prediction Problem Using Evolutionary-based Features. - Md. Wakil Ahmad; Md. Easin Arafat; Ghazaleh Taherzadeh; Alok Sharma; Shubhashis Roy Dipta; Abdollah Dehzangi; Swakkhar Shatabda (IEEE Access, 2020)

SEMal: Accurate protein malonylation site predictor using structural and evolutionary information. - Shubhashis Roy Dipta; Ghazaleh Taherzadeh; Md. Wakil Ahmad; Md. Easin Arafat; Swakkhar Shatabda; Abdollah Dehzangi (Comput. Biol. Medicine, 2020)

Semantically-informed Hierarchical Event Modeling. - Shubhashis Roy Dipta; Mehdi Rezaee; Francis Ferraro (*SEM@ACL, 2023)

SeeBel: Seeing is Believing. - Sourajit Saha; Shubhashis Roy Dipta (CoRR, 2023)

HU at SemEval-2024 Task 8A: Can Contrastive Learning Learn Embeddings to Detect Machine-Generated Text? - Shubhashis Roy Dipta; Sadat Shahriar (SemEval@NAACL, 2024)

UMBCLU at SemEval-2024 Task 1: Semantic Textual Relatedness with and without machine translation. - Shubhashis Roy Dipta; Sai Vallurupalli (SemEval@NAACL, 2024)

UMBCLU at SemEval-2024 Task 1A and 1C: Semantic Textual Relatedness with and without machine translation. - Shubhashis Roy Dipta; Sai Vallurupalli (CoRR, 2024)

MethEvo: an accurate evolutionary information-based methylation site predictor. - Sadia Islam; Shafayat Bin Shabbir Mugdha; Shubhashis Roy Dipta; Md. Easin Arafat; Swakkhar Shatabda; Hamid Alinejad-Rokny; Iman Dehzangi (Neural Comput. Appl., 2024)

Q2E: Query-to-Event Decomposition for Zero-Shot Multilingual Text-to-Video Retrieval. - Shubhashis Roy Dipta; Francis Ferraro (CoRR, 2025)