New Operators of Genetic Algorithms for Traveling Salesman Problem. - Shubhra Sankar Ray; Sanghamitra Bandyopadhyay; Sankar K. Pal (ICPR (2), 2004)

Neurocomputing for Certain Bioinformatics Tasks. - Shubhra Sankar Ray; Sanghamitra Bandyopadhyay; Pabitra Mitra; Sankar K. Pal (MSRAS, 2004)

New Genetic Operators for Solving TSP: Application to Microarray Gene Ordering. - Shubhra Sankar Ray; Sanghamitra Bandyopadhyay; Sankar K. Pal (PReMI, 2005)

Evolutionary computation in bioinformatics: a review. - Sankar K. Pal; Sanghamitra Bandyopadhyay; Shubhra Sankar Ray (IEEE Trans. Syst. Man Cybern. Syst., 2006)

New Distance Measure for Microarray Gene Expressions Using Linear Dynamic Range of Photo Multiplier Tube. - Shubhra Sankar Ray; Sanghamitra Bandyopadhyay; Sankar K. Pal (ICCTA, 2007)

Genetic operators for combinatorial optimization in TSP and microarray gene ordering. - Shubhra Sankar Ray; Sanghamitra Bandyopadhyay; Sankar K. Pal (Appl. Intell., 2007)

Dynamic Range-Based Distance Measure for Microarray Expressions and a Fast Gene-Ordering Algorithm. - Shubhra Sankar Ray; Sanghamitra Bandyopadhyay; Sankar K. Pal (IEEE Trans. Syst. Man Cybern. Part B, 2007)

Combining Multisource Information Through Functional-Annotation-Based Weighting: Gene Function Prediction in Yeast. - Shubhra Sankar Ray; Sanghamitra Bandyopadhyay; Sankar K. Pal (IEEE Trans. Biomed. Eng., 2009)

Fuzzy Rough Granular Self Organizing Map. - Avatharam Ganivada; Shubhra Sankar Ray; Sankar K. Pal (RSKT, 2011)

A Weighted Power Framework for Integrating Multisource Information: Gene Function Prediction in Yeast. - Shubhra Sankar Ray; Sanghamitra Bandyopadhyay; Sankar K. Pal (IEEE Trans. Biomed. Eng., 2012)

Fuzzy rough granular self-organizing map and fuzzy rough entropy. - Avatharam Ganivada; Shubhra Sankar Ray; Sankar K. Pal (Theor. Comput. Sci., 2012)

A Weighted Threshold for Detection of Cancerous miRNA Expressions. - Jayanta Kumar Pal; Shubhra Sankar Ray; Sankar K. Pal (Fundam. Informaticae, 2013)

Fuzzy rough sets, and a granular neural network for unsupervised feature selection. - Avatharam Ganivada; Shubhra Sankar Ray; Sankar K. Pal (Neural Networks, 2013)

RNA Secondary Structure Prediction Using Soft Computing. - Shubhra Sankar Ray; Sankar K. Pal (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Noncoding RNAs and their annotation using metagenomics algorithms. - Shubhra Sankar Ray; Sonam Maiti (WIREs Data Mining Knowl. Discov., 2015)

Identifying relevant group of miRNAs in cancer using fuzzy mutual information. - Jayanta Kumar Pal; Shubhra Sankar Ray; Sankar K. Pal (Medical Biol. Eng. Comput., 2016)

A Granular Self-Organizing Map for Clustering and Gene Selection in Microarray Data. - Shubhra Sankar Ray; Avatharam Ganivada; Sankar K. Pal (IEEE Trans. Neural Networks Learn. Syst., 2016)

Finding optimum width of discretization for gene expressions using functional annotations. - Sampa Misra; Shubhra Sankar Ray (Comput. Biol. Medicine, 2017)

Fuzzy mutual information based grouping and new fitness function for PSO in selection of miRNAs in cancer. - Jayanta Kumar Pal; Shubhra Sankar Ray; Sankar K. Pal (Comput. Biol. Medicine, 2017)

Granular Neural Networks, Pattern Recognition and Bioinformatics - Sankar K. Pal; Shubhra Sankar Ray; Avatharam Ganivada (Springer, 2017)

Fuzzy-Rough Entropy Measure and Histogram Based Patient Selection for miRNA Ranking in Cancer. - Jayanta Kumar Pal; Shubhra Sankar Ray; Sung-Bae Cho; Sankar K. Pal (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Genetic algorithm for assigning weights to gene expressions using functional annotations. - Shubhra Sankar Ray; Sampa Misra (Comput. Biol. Medicine, 2019)

Decision Theoretic Rough Set-Based Neighborhood for Self-Organizing Map. - Shubhra Sankar Ray; Sresht Agrawal; Sudip Ghosh 003 (SN Comput. Sci., 2021)

Identifying Drug Resistant miRNAs Using Entropy Based Ranking. - Jayanta Kumar Pal; Shubhra Sankar Ray; Sankar K. Pal (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Predicting drug-resistant miRNAs in cancer. - Amrita Kundu; Joginder Singh; Jayanta Kumar Pal; Shubhra Sankar Ray (Netw. Model. Anal. Health Informatics Bioinform., 2023)

Weighted Combination of Łukasiewicz implication and Fuzzy Jaccard similarity in Hybrid Ensemble Framework (WCLFJHEF) for Gene Selection. - Sukriti Roy; Joginder Singh; Shubhra Sankar Ray (Comput. Biol. Medicine, 2024)

Integrating fuzzy rough set-based entropies for identifying drug-resistant miRNAs in cancer. - Joginder Singh; Shubhra Sankar Ray (J. Comput. Sci., 2025)

Identifying pan-cancer and cancer subtype miRNAs using interpretable convolutional neural network. - Joginder Singh; Shubhra Sankar Ray; Sukriti Roy (J. Comput. Sci., 2025)