Discovery, Identification and Comparative Analysis of Non-Specific Lipid Transfer Protein (nsLtp) Family in Solanaceae. - Wanfei Liu; Dawei Huang; Kan Liu; Songnian Hu; Jun Yu 004; Gang Gao; Shuhui Song (Genom. Proteom. Bioinform., 2010)

wapRNA: a web-based application for the processing of RNA sequences. - Wenming Zhao; Wanfei Liu; Dongmei Tian; Bixia Tang; Yanqing Wang; Caixia Yu; Rujiao Li; Yunchao Ling; Jiayan Wu; Shuhui Song; Songnian Hu (Bioinform., 2011)

The Association Between H3K4me3 and Antisense Transcription. - Peng Cui 004; Wanfei Liu; Yuhui Zhao; Qiang Lin; Feng Ding 003; Chengqi Xin; Jianing Geng; Shuhui Song; Fanglin Sun; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2012)

Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis. - Peng Cui 004; Wanfei Liu; Yuhui Zhao; Qiang Lin; Daoyong Zhang; Feng Ding 003; Chengqi Xin; Zhang Zhang 002; Shuhui Song; Fanglin Sun; Jun Yu 004; Songnian Hu (Genom. Proteom. Bioinform., 2012)

An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic Mammary Epithelial Cells. - Lina Ma; Linghu Nie; Jing Liu; Bing Zhang 007; Shuhui Song; Min Sun; Jin Yang; Yadong Yang; Xiangdong Fang; Songnian Hu; Yongliang Zhao; Jun Yu 004 (Genom. Proteom. Bioinform., 2012)

MeRIP-PF: An Easy-to-use Pipeline for High-resolution Peak-finding in MeRIP-Seq Data. - Yuli Li; Shuhui Song; Cuiping Li 004; Jun Yu 004 (Genom. Proteom. Bioinform., 2013)

Rice Genomics: over the Past Two Decades and into the Future. - Shuhui Song; Dongmei Tian; Zhang Zhang 002; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2018)

Genome Variation Map: a data repository of genome variations in BIG Data Center. - Shuhui Song; Dongmei Tian; Cuiping Li 004; Bixia Tang; Lili Dong; Jing-Fa Xiao; Yiming Bao; Wenming Zhao; Hang He; Zhang Zhang 002 (Nucleic Acids Res., 2018)

A Semi-Empirical SNR Model for Soil Moisture Retrieval Using GNSS SNR Data. - Mutian Han; Yunlong Zhu; Dongkai Yang; Xuebao Hong; Shuhui Song (Remote. Sens., 2018)

The Elements of Data Sharing. - Zhang Zhang 002; Shuhui Song; Jun Yu 004; Wenming Zhao; Jing-Fa Xiao; Yiming Bao (Genom. Proteom. Bioinform., 2020)

Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters. - Qi Liu 048; Shilei Zhao; Chengmin Shi; Shuhui Song; Sihui Zhu; Yankai Su; Wenming Zhao; Mingkun Li; Yiming Bao; Yongbiao Xue; Hua Chen 010 (Genom. Proteom. Bioinform., 2020)

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. - Shuhui Song; Lina Ma; Dong Zou; Dongmei Tian; Cuiping Li 004; Junwei Zhu; Meili Chen; Anke Wang; Yingke Ma; Mengwei Li; Xufei Teng; Ying Cui; et al. (Genom. Proteom. Bioinform., 2020)

Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades. - Xufei Teng; Qianpeng Li; Zhao Li 008; Yuansheng Zhang; Guangyi Niu; Jing-Fa Xiao; Jun Yu 004; Zhang Zhang 002; Shuhui Song (Genom. Proteom. Bioinform., 2020)

SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice. - Jun Yan; Dong Zou; Chen Li 056; Zhang Zhang 002; Shuhui Song; Xiangfeng Wang (Genom. Proteom. Bioinform., 2020)

GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. - Dongmei Tian; Pei Wang; Bixia Tang; Xufei Teng; Cuiping Li 004; Xiaonan Liu; Dong Zou; Shuhui Song; Zhang Zhang 002 (Nucleic Acids Res., 2020)

Genomic Epidemiology of SARS-CoV-2 in Pakistan. - Shuhui Song; Cuiping Li 004; Lu Kang; Dongmei Tian; Nazish Badar; Wentai Ma; Shilei Zhao; Xuan Jiang; Chun Wang; Yongqiao Sun; Wenjie Li; Meng Lei; et al. (Genom. Proteom. Bioinform., 2021)

Genome Variation Map: a worldwide collection of genome variations across multiple species. - Cuiping Li 004; Dongmei Tian; Bixia Tang; Xiaonan Liu; Xufei Teng; Wenming Zhao; Zhang Zhang 002; Shuhui Song (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

TileSpGEMM: a tiled algorithm for parallel sparse general matrix-matrix multiplication on GPUs. - Yuyao Niu; Zhengyang Lu 003; Haonan Ji; Shuhui Song; Zhou Jin 001; Weifeng Liu 002 (PPoPP, 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

RCoV19: A One-Stop Hub for SARS-CoV-2 Genome Data Integration, Variant Monitoring, and Risk Pre-Warning. - Cuiping Li 004; Lina Ma; Dong Zou; Rongqin Zhang; Xue Bai; Lun Li; Gangao Wu; Tianhao Huang; Wei Zhao 040; Enhui Jin; Yiming Bao; Shuhui Song (Genom. Proteom. Bioinform., 2023)

HGD: an integrated homologous gene database across multiple species. - Guangya Duan; Gangao Wu; Xiaoning Chen; Dongmei Tian; Zhaohua Li; Yanling Sun; Zhenglin Du; Lili Hao; Shuhui Song; Yuan Gao; Jing-Fa Xiao; Zhang Zhang 002; et al. (Nucleic Acids Res., 2023)

GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals. - Xiaonan Liu; Dongmei Tian; Cuiping Li 004; Bixia Tang; Zhonghuang Wang; Rongqin Zhang; Yitong Pan; Yi Wang 113; Dong Zou; Zhang Zhang 002; Shuhui Song (Nucleic Acids Res., 2023)

McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks. - Lun Li; Bo Xu; Dongmei Tian; Anke Wang; Junwei Zhu; Cuiping Li 004; Na Li; Wei Zhao 040; Leisheng Shi; Yongbiao Xue; Zhang Zhang 002; Yiming Bao; et al. (Briefings Bioinform., 2023)