Predicting human microRNA-disease associations based on support vector machine. - Qinghua Jiang; Guohua Wang; Shuilin Jin; Yu Li; Yadong Wang (Int. J. Data Min. Bioinform., 2013)

LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression. - Qinghua Jiang; Jixuan Wang; Xiaoliang Wu; Rui Ma; Tianjiao Zhang; Shuilin Jin; Zhijie Han 002; Renjie Tan; Jiajie Peng; Guiyou Liu; Yu Li; Yadong Wang 001 (Nucleic Acids Res., 2015)

ERDS-pe: A paired hidden Markov model for copy number variant detection from whole-exome sequencing data. - Renjie Tan; Jixuan Wang; Xiaoliang Wu; Guoqiang Wan; Rongjie Wang; Rui Ma; Zhijie Han 002; Wenyang Zhou; Shuilin Jin; Qinghua Jiang; Yadong Wang 001 (BIBM, 2016)

DTWscore: differential expression and cell clustering analysis for time-series single-cell RNA-seq data. - Zhuo Wang; Shuilin Jin; Guiyou Liu; Xiurui Zhang; Nan Wang; Deliang Wu; Yang Hu 008; Chiping Zhang; Qinghua Jiang; Li Xu; Yadong Wang 001 (BMC Bioinform., 2017)

ProbPFP: A Multiple Sequence Alignment Algorithm Combining Partition Function and Hidden Markov Model with Particle Swarm Optimization. - Qing Zhan; Nan Wang; Shuilin Jin; Renjie Tan; Qinghua Jiang; Yadong Wang (BIBM, 2018)

BIN1 rs744373 Variant Is Significantly Associated with Alzheimer's Disease in Caucasian but Not East Asian Populations. - Zhifa Han; Tao Wang; Rui Tian; Wenyang Zhou; Pingping Wang; Peng Ren; Jian Zong; Yang Hu 008; Shuilin Jin; Qinghua Jiang (ICIC (1), 2018)

EWAS: epigenome-wide association study software 2.0. - Jing Xu; Linna Zhao; Di Liu; Simeng Hu; Xiuling Song; Jin Li; Hongchao Lv; Lian Duan; Mingming Zhang; Qinghua Jiang; Guiyou Liu; Shuilin Jin; et al. (Bioinform., 2018)

Disease status affects the association between rs4813620 and the expression of Alzheimer's disease susceptibility gene TRIB3. - Guiyou Liu; Shuilin Jin; Yang Hu 008; Qinghua Jiang (Proc. Natl. Acad. Sci. USA, 2018)

NDRindex: A method for the quality assessment of single-cell RNA-Seq preprocessing data. - Ruiyu Xiao; Guoshan Lu; Shuilin Jin (BIBM, 2019)

BIN1 rs744373 variant shows different association with Alzheimer's disease in Caucasian and Asian populations. - Zhifa Han; Tao Wang; Rui Tian; Wenyang Zhou; Pingping Wang; Peng Ren; Jian Zong; Yang Hu 008; Shuilin Jin; Qinghua Jiang (BMC Bioinform., 2019)

ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function. - Qing Zhan; Nan Wang; Shuilin Jin; Renjie Tan; Qinghua Jiang; Yadong Wang (BMC Bioinform., 2019)

A Method Based on Differential Entropy-Like Function for Detecting Differentially Expressed Genes Across Multiple Conditions in RNA-Seq Studies. - Zhuo Wang; Shuilin Jin; Chiping Zhang (Entropy, 2019)

LAK: Lasso and K-Means Based Single-Cell RNA-Seq Data Clustering Analysis. - Jiao Hua; Hongkun Liu; Boyang Zhang; Shuilin Jin (IEEE Access, 2020)

NDRindex: a method for the quality assessment of single-cell RNA-Seq preprocessing data. - Ruiyu Xiao; Guoshan Lu; Wanqian Guo; Shuilin Jin (BMC Bioinform., 2020)

ERDS-Exome: A Hybrid Approach for Copy Number Variant Detection from Whole-Exome Sequencing Data. - Renjie Tan; Jixuan Wang; Xiaoliang Wu; Liran Juan; Tianjiao Zhang; Rui Ma; Qing Zhan; Tao Wang; Shuilin Jin; Qinghua Jiang; Yadong Wang (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

SDImpute: A statistical block imputation method based on cell-level and gene-level information for dropouts in single-cell RNA-seq data. - Jing Qi; Yang Zhou; Zicen Zhao; Shuilin Jin (PLoS Comput. Biol., 2021)

Correction: SDImpute: A statistical block imputation method based on cell-level and gene-level information for dropouts in single-cell RNA-seq data. - Jing Qi; Yang Zhou; Zicen Zhao; Shuilin Jin (PLoS Comput. Biol., 2022)

Integration of unpaired single cell omics data by deep transfer graph convolutional network. - Yulong Kan; Yunjing Qi; Zhongxiao Zhang; Xikeng Liang; Weihao Wang; Shuilin Jin (PLoS Comput. Biol., 2025)

A comparison of integration methods for single-cell RNA sequencing data and ATAC sequencing data. - Yulong Kan; Weihao Wang; Yunjing Qi; Zhongxiao Zhang; Xikeng Liang; Shuilin Jin (Quant. Biol., 2025)