A rapid method for detection of putative RNAi target genes in genomic data. - Yair Horesh; Amihood Amir; Shulamit Michaeli; Ron Unger (ECCB, 2003)

RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules. - Yair Horesh; Tirza Doniger; Shulamit Michaeli; Ron Unger (BMC Bioinform., 2007)

Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes. - Inna Myslyuk; Tirza Doniger; Yair Horesh; Avraham Hury; Ran Hoffer; Yaara Ziporen; Shulamit Michaeli; Ron Unger (BMC Bioinform., 2008)