Duplex-Indel: a Snakemake pipeline for somatic Indel calling in Tn5 transposase-based duplex sequencing data. - Guanlan Dong; Nazia Hilal; Shayna Mallett; Bowen Jin; Shulin Mao; Monica Devi Manam; Diane D. Shao; Sangita Choudhury; August Yue Huang; Eunjung Alice Lee (Bioinform., 2026)