NONCODE v2.0: decoding the non-coding. - Shunmin He; Changning Liu; Geir Skogerbø; Haitao Zhao; Jie Wang; Tao Liu 022; Baoyan Bai; Yi Zhao 013; Runsheng Chen (Nucleic Acids Res., 2008)

Clustered microRNAs' coordination in regulating protein-protein interaction network. - Xiongying Yuan; Changning Liu; Pengcheng Yang; Shunmin He; Qi Liao; Shuli Kang; Yi Zhao 013 (BMC Syst. Biol., 2009)

piRBase: a web resource assisting piRNA functional study. - Peng Zhang 047; Xiaohui Si; Geir Skogerbø; Jiajia Wang; Dongya Cui; Yongxing Li; Xubin Sun; Li Liu; Baofa Sun; Runsheng Chen; Shunmin He; Da-Wei Huang (Database J. Biol. Databases Curation, 2014)

BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications. - Ya Cui; Xiaowei Chen; Huaxia Luo; Zhen Fan 002; Jianjun Luo 001; Shunmin He; Haiyan Yue; Peng Zhang 050; Runsheng Chen (Bioinform., 2016)

Computational identification of piRNA targets on mouse mRNAs. - Jiao Yuan; Peng Zhang 047; Ya Cui; Jiajia Wang; Geir Skogerbø; Da-Wei Huang; Runsheng Chen; Shunmin He (Bioinform., 2016)

LncVar: a database of genetic variation associated with long non-coding genes. - Xiaowei Chen; Yajing Hao 001; Ya Cui; Zhen Fan 002; Shunmin He; Jianjun Luo 001; Runsheng Chen (Bioinform., 2017)

Dynamic-BM: multispecies Dynamic BodyMap database from temporal RNA-seq data. - Ya Cui; Xiaowei Chen; Yiwei Niu; Dongpeng Wang; Huaxia Luo; Zhen Fan 002; Dan Wang; Wei Wu 025; XueYi Teng; Shunmin He; Jianjun Luo 001; Runsheng Chen (Briefings Bioinform., 2018)

SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci. - Yajing Hao 001; Lili Zhang 007; Yiwei Niu; Tanxi Cai; Jianjun Luo 001; Shunmin He; Bao Zhang; Dejiu Zhang; Yan Qin; Fuquan Yang; Runsheng Chen (Briefings Bioinform., 2018)

piRBase: a comprehensive database of piRNA sequences. - Jiajia Wang; Peng Zhang 047; Yiping Lu; Yanyan Li; Yu Zheng 030; Yunchao Kan; Runsheng Chen; Shunmin He (Nucleic Acids Res., 2019)

NPInter v4.0: an integrated database of ncRNA interactions. - XueYi Teng; Xiaomin Chen; Hua Xue; Yiheng Tang; Peng Zhang 047; Quan Kang; Yajing Hao 001; Runsheng Chen; Yi Zhao 013; Shunmin He (Nucleic Acids Res., 2020)

SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling. - Yanyan Li; Honghong Zhou; Xiaomin Chen; Yu Zheng 030; Quan Kang; Di Hao; Lili Zhang 007; Tingrui Song; Huaxia Luo; Yajing Hao 001; Runsheng Chen; Peng Zhang 047; et al. (Genom. Proteom. Bioinform., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. - Lianhe Zhao; Jiajia Wang; Yanyan Li; Tingrui Song; Yang Wu; Shuangsang Fang; Dechao Bu; Hui Li 038; Liang Sun; Dong Pei; Yu Zheng 030; Jianqin Huang; et al. (Nucleic Acids Res., 2021)

piRBase: integrating piRNA annotation in all aspects. - Jiajia Wang; Yirong Shi; Honghong Zhou; Peng Zhang 047; Tingrui Song; Zhiye Ying; Haopeng Yu; Yanyan Li; Yi Zhao 013; Xiaoxi Zeng; Shunmin He; Runsheng Chen (Nucleic Acids Res., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

NPInter v5.0: ncRNA interaction database in a new era. - Yu Zheng 030; Huaxia Luo; XueYi Teng; Xinpei Hao; Xiaoyu Yan; Yiheng Tang; Wanyu Zhang; Yuanxin Wang; Peng Zhang 047; Yanyan Li; Yi Zhao 013; Runsheng Chen; et al. (Nucleic Acids Res., 2023)

Pathogen Adaptation of HLA Alleles and Its Correlation with Autoimmune Diseases in the Han Chinese. - Shuai Liu; Yanyan Li; Tingrui Song; Jingjing Zhang; Peng Zhang 047; Huaxia Luo; Sijia Zhang; Yiwei Niu; Tao Xu; Shunmin He (Genom. Proteom. Bioinform., 2025)

Enzyme Repertoires and Genomic Insights into Lycium barbarum Pectin Polysaccharide Biosynthesis. - Haiyan Yue; Yiheng Tang; Aixuan Li; Lili Zhang 007; Yiwei Niu; Yiming Zhang; Hao Wang; Jianjun Luo 001; Yi Zhao 013; Shunmin He; Chang Chen; Runsheng Chen (Genom. Proteom. Bioinform., 2025)