TEAM: efficient two-locus epistasis tests in human genome-wide association study. - Xiang Zhang 001; Shunping Huang; Fei Zou; Wei Wang 010 (Bioinform., 2010)

Tools for efficient epistasis detection in genome-wide association study. - Xiang Zhang 001; Shunping Huang; Fei Zou; Wei Wang 010 (Source Code Biol. Medicine, 2011)

seeQTL: a searchable database for human eQTLs. - Kai Xia; Andrey A. Shabalin; Shunping Huang; Vered Madar; Yi-Hui Zhou; Wei Wang 010; Fei Zou; Wei Sun 006; Patrick F. Sullivan; Fred A. Wright (Bioinform., 2012)

Chapter 10: Mining Genome-Wide Genetic Markers. - Xiang Zhang 001; Shunping Huang; Zhaojun Zhang; Wei Wang 010 (PLoS Comput. Biol., 2012)

Read Annotation Pipeline for High-Throughput Sequencing Data. - James Holt; Shunping Huang; Leonard McMillan; Wei Wang 010 (BCB, 2013)

Transforming Genomes Using MOD Files with Applications. - Shunping Huang; Chia-Yu Kao; Leonard McMillan; Wei Wang 010 (BCB, 2013)

GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment. - Zhaojun Zhang; Shunping Huang; Jack Wang 004; Xiang Zhang 001; Fernando Pardo-Manuel de Villena; Leonard McMillan; Wei Wang 010 (Bioinform., 2013)

A novel multi-alignment pipeline for high-throughput sequencing data. - Shunping Huang; James Holt; Chia-Yu Kao; Leonard McMillan; Wei Wang 010 (Database J. Biol. Databases Curation, 2014)

Efficient Collaborative Filtering via Data Augmentation and Step-size Optimization. - Xuejun Liao; Patrick Koch; Shunping Huang; Yan Xu (KDD, 2021)

Adaptive Visual Servoing Trajectory Tracking Control of Nonholonomic Mobile Robot With Position Estimation. - Shunping Huang; Weiyao Lan; Xiao Yu 002 (CDC, 2022)