Probabilistic Inference of Hand Motion from Neural Activity in Motor Cortex. - Yun Gao; Michael J. Black; Elie Bienenstock; Shy Shoham; John P. Donoghue (NIPS, 2001)

Robust clustering by deterministic agglomeration EM of mixtures of multivariate t-distributions. - Shy Shoham (Pattern Recognit., 2002)

Statistical encoding model for a primary motor cortical brain-machine interface. - Shy Shoham; Liam Paninski; Matthew Fellows; Nicholas G. Hatsopoulos; John P. Donoghue; Richard A. Normann (IEEE Trans. Biomed. Eng., 2005)

A neural network implementing optimal state estimation based on dynamic spike train decoding. - Omer Bobrowski; Ron Meir; Shy Shoham; Yonina C. Eldar (NIPS, 2007)

Generation of Spike Trains with Controlled Auto- and Cross-Correlation Functions. - Michael Krumin; Shy Shoham (Neural Comput., 2009)

Multivariate Autoregressive Modeling and Granger Causality Analysis of Multiple Spike Trains. - Michael Krumin; Shy Shoham (Comput. Intell. Neurosci., 2010)

Correlation-Based Analysis and Generation of Multiple Spike Trains Using Hawkes Models with an Exogenous Input. - Michael Krumin; Inna Reutsky; Shy Shoham (Frontiers Comput. Neurosci., 2010)

Correlation-distortion based identification of Linear-Nonlinear-Poisson models. - Michael Krumin; Avner Shimron; Shy Shoham (J. Comput. Neurosci., 2010)

Photonic interfacing with natural and bioengineered large-scale neuronal networks. - Shy Shoham; Inna Reutsky-Gefen; Adi Schejter; Anat Marom; Hod Dana (NER, 2015)

Cortical hemodynamic responses induced by low-intensity transcranial ultrasound stimulation of mouse cortex. - Yi Yuan 004; Zhijie Wang 011; Mengyang Liu; Shy Shoham (NeuroImage, 2020)