Batch RNAi selector: A standalone program to predict specific siRNA candidates in batches with enhanced sensitivity. - Shyamala Iyer; Kerry Deutsch; Xiaowei Yan; Biaoyang Lin (Comput. Methods Programs Biomed., 2007)

Optimal Timing and Duration of Induction Therapy for HIV-1 Infection. - Marcel E. Curlin; Shyamala Iyer; John E. Mittler (PLoS Comput. Biol., 2007)

Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data. - Wenjie Deng; Brandon Maust; Dylan H. Westfall; Lennie Chen; Hong Zhao; Brendan B. Larsen; Shyamala Iyer; Yi Liu; James I. Mullins (Bioinform., 2013)