A survey of current trends in computational drug repositioning. - Jiao Li 001; Si Zheng 001; Bin Chen; Atul J. Butte; S. Joshua Swamidass; Zhiyong Lu (Briefings Bioinform., 2016)

Identifying Scientific Project-generated Data Citation from Full-text Articles: An Investigation of TCGA Data Citation. - Jiao Li 001; Si Zheng 001; Hongyu Kang; Zhen Hou; Qing Qian (J. Data Inf. Sci., 2017)

Building a Controlled Vocabulary for Standardizing Precision Medicine Terms. - Meng Wu; Yan Liu; Hongyu Kang; Si Zheng 001; Jiao Li 001; Li Hou (CoRR, 2018)

Identifying RNA Biomarkers for Oesophageal Squamous Cell Carcinoma. - Si Zheng 001; Jiagen Li; Li Hou; Jiao Li 001 (MedInfo, 2019)

CurrMG: A Curriculum Learning Approach for Graph Based Molecular Property Prediction. - Yaowen Gu; Si Zheng 001; Jiao Li 001 (BIBM, 2021)

Developing a Siamese Network for UTIs Risk Prediction in Immobile Patients Undergoing Stroke. - Zidu Xu; Chen Zhu; Yaowen Gu; Si Zheng 001; Xiangyu Sun; Jing Cao; Xinjuan Wu; Jiao Li 001 (MedInfo, 2021)

MilGNet: A Multi-instance Learning-based Heterogeneous Graph Network for Drug repositioning. - Yaowen Gu; Si Zheng 001; Bowen Zhang; Hongyu Kang; Jiao Li 001 (BIBM, 2022)

An efficient curriculum learning-based strategy for molecular graph learning. - Yaowen Gu; Si Zheng 001; Zidu Xu; Qijin Yin; Liang Li; Jiao Li 001 (Briefings Bioinform., 2022)

REDDA: Integrating multiple biological relations to heterogeneous graph neural network for drug-disease association prediction. - Yaowen Gu; Si Zheng 001; Qijin Yin; Rui Jiang 001; Jiao Li 001 (Comput. Biol. Medicine, 2022)

MGREL: A multi-graph representation learning-based ensemble learning method for gene-disease association prediction. - Ziyang Wang; Yaowen Gu; Si Zheng 001; Lin Yang; Jiao Li 001 (Comput. Biol. Medicine, 2023)

Machine learning-enabled virtual screening indicates the anti-tuberculosis activity of aldoxorubicin and quarfloxin with verification by molecular docking, molecular dynamics simulations, and biological evaluations. - Si Zheng 001; Yaowen Gu; Yuzhen Gu; Yelin Zhao; Liang Li; Min Wang; Rui Jiang 001; Xia Yu; Ting Chen; Jiao Li 001 (Briefings Bioinform., 2024)

Deep multiple instance learning on heterogeneous graph for drug-disease association prediction. - Yaowen Gu; Si Zheng 001; Bowen Zhang; Hongyu Kang; Rui Jiang 001; Jiao Li 001 (Comput. Biol. Medicine, 2025)

Classification of Chronic Dizziness Using Large Language Models. - Xiaowei Xu; Ruixuan Jiang; Si Zheng 001; Min Wang; Yi Ju; Jiao Li 001 (J. Heal. Informatics Res., 2025)