ACE: accurate correction of errors using K-mer tries. - Siavash Sheikhizadeh; Dick de Ridder (Bioinform., 2015)

PanTools: representation, storage and exploration of pan-genomic data. - Siavash Sheikhizadeh; M. Eric Schranz; Mehmet Akdel; Dick de Ridder; Sandra Smit (Bioinform., 2016)

Efficient inference of homologs in large eukaryotic pan-proteomes. - Siavash Sheikhizadeh; Dick de Ridder; M. Eric Schranz; Sandra Smit (BMC Bioinform., 2018)