HiCNorm: removing biases in Hi-C data via Poisson regression. - Ming Hu 001; Ke Deng; Siddarth Selvaraj; Zhaohui S. Qin; Bing Ren; Jun S. Liu (Bioinform., 2012)

A high-resolution map of the three-dimensional chromatin interactome in human cells. - Fulai Jin; Yan Li; Jesse R. Dixon; Siddarth Selvaraj; Zhen Ye; Ahyoung Lee; Chia-An Yen; Anthony D. Schmitt; Celso A. Espinoza; Bing Ren (Nat., 2013)

Bayesian Inference of Spatial Organizations of Chromosomes. - Ming Hu 001; Ke Deng; Zhaohui S. Qin; Jesse R. Dixon; Siddarth Selvaraj; Jennifer Fang; Bing Ren; Jun S. Liu (PLoS Comput. Biol., 2013)

3D chromosome rendering from Hi-C data using virtual reality. - Yixin Zhu; Siddarth Selvaraj; Philip P. Weber; Jennifer Fang; Jürgen P. Schulze; Bing Ren (Visualization and Data Analysis, 2015)

Chromatin architecture reorganization during stem cell differentiation Open. - Jesse R. Dixon; Inkyung Jung; Siddarth Selvaraj; Yin Shen; Jessica E. Antosiewicz-Bourget; Ahyoung Lee; Zhen Ye; Audrey Kim; Nisha Rajagopal; Wei Xie; Yarui Diao; Jing Liang; et al. (Nat., 2015)

Integrating Hi-C links with assembly graphs for chromosome-scale assembly. - Jay Ghurye; Arang Rhie; Brian Walenz; Anthony D. Schmitt; Siddarth Selvaraj; Mihai Pop; Adam M. Phillippy; Sergey Koren (PLoS Comput. Biol., 2019)