Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text. - Siddhartha Jonnalagadda; Luis Tari; Jörg Hakenberg; Chitta Baral; Graciela Gonzalez 001 (HLT-NAACL (Short Papers), 2009)

A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities. - Siddhartha Jonnalagadda; Robert Leaman; Trevor Cohen; Graciela Gonzalez 001 (CICLing, 2010)

Sentence Simplification Aids Protein-Protein Interaction Extraction - Siddhartha Jonnalagadda; Graciela Gonzalez 001 (CoRR, 2010)

Efficient Extraction of Protein-Protein Interactions from Full-Text Articles. - Jörg Hakenberg; Robert Leaman; Nguyen Ha Vo; Siddhartha Jonnalagadda; Ryan Sullivan; Christopher Miller; Luis Tari; Chitta Baral; Graciela Gonzalez 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Evaluating Distributional Semantic and Feature Selection for Extracting Relationships from Biological Text. - Ehsan Emadzadeh; Siddhartha Jonnalagadda; Graciela Gonzalez 001 (ICMLA (2), 2011)

NEMO: Extraction and normalization of organization names from PubMed affiliation strings - Siddhartha Jonnalagadda; Philip Topham (CoRR, 2011)

BioSimplify: an open source sentence simplification engine to improve recall in automatic biomedical information extraction - Siddhartha Jonnalagadda; Graciela Gonzalez 001 (CoRR, 2011)

An Effective Approach to Biomedical Information Extraction with Limited Training Data. - Siddhartha Jonnalagadda (2011)

Towards a semantic lexicon for clinical natural language processing. - Hongfang Liu; Stephen T. Wu; Dingcheng Li; Siddhartha Jonnalagadda; Sunghwan Sohn; Kavishwar B. Wagholikar; Peter J. Haug; Stanley M. Huff; Christopher G. Chute (AMIA, 2012)

Asthma Status Identification with Natural Language Processing. - Stephen T. Wu; Young J. Juhn; Sunghwan Sohn; Ravikumar Komandur Elayavilli; Kavishwar B. Wagholikar; Siddhartha Jonnalagadda; Hongfang Liu (AMIA, 2012)

Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. - Sunghwan Sohn; Sean P. Murphy; Siddhartha Jonnalagadda; Kavishwar B. Wagholikar; Stephen T. Wu; Christopher G. Chute; Hongfang Liu; Scott R. Halgrim (HISB, 2012)

Discovering opinion leaders for medical topics using news articles. - Siddhartha Jonnalagadda; Ryan Peeler; Philip Topham (J. Biomed. Semant., 2012)

Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules. - Siddhartha Jonnalagadda; Dingcheng Li; Sunghwan Sohn; Stephen Tze-Inn Wu; Kavishwar B. Wagholikar; Manabu Torii; Hongfang Liu (J. Am. Medical Informatics Assoc., 2012)

Enhancing clinical concept extraction with distributional semantics. - Siddhartha Jonnalagadda; Trevor Cohen; Stephen T. Wu; Graciela Gonzalez 001 (J. Biomed. Informatics, 2012)

Prioritize journals relevant to a clinical topic: A survey of US cardiologists about heart failure. - Siddhartha Jonnalagadda; Christopher G. Chute; Hongfang Liu (AMIA, 2013)

Automatically Extracting Clinically Useful Sentences from UpToDate to Support Clinicians' Information Needs. - Rashmi Mishra; Guilherme Del Fiol; Halil Kilicoglu; Siddhartha Jonnalagadda; Marcelo Fiszman (AMIA, 2013)

Prioritizing journals relevant to a topic for addressing clinicians' information needs. - Siddhartha Jonnalagadda; Soheil Moosavinasab; Dingcheng Li; Martin D. Abel; Christopher G. Chute; Hongfang Liu (BIBM, 2013)

Towards assigning references using semantic, journal and citation relevance. - Dingcheng Li; Hongfang Liu; Christopher G. Chute; Siddhartha Jonnalagadda (BIBM, 2013)

Integrated cTAKES for Concept Mention Detection and Normalization. - Hongfang Liu; Kavishwar B. Wagholikar; Siddhartha Jonnalagadda; Sunghwan Sohn (CLEF (Working Notes), 2013)

Automatic Identification of Comparative Effectiveness Research from Medline Citations to Support Clinicians' Treatment Information Needs. - Mingyuan Zhang; Guilherme Del Fiol; Randall Grout; Siddhartha Jonnalagadda; Richard Medlin; Rashmi Mishra; Charlene R. Weir; Hongfang Liu; Javed Mostafa; Marcelo Fiszman (MedInfo, 2013)

Pooling annotated corpora for clinical concept extraction. - Kavishwar B. Wagholikar; Manabu Torii; Siddhartha Jonnalagadda; Hongfang Liu (J. Biomed. Semant., 2013)

A new iterative method to reduce workload in systematic review process. - Siddhartha Jonnalagadda; Diana B. Petitti (Int. J. Comput. Biol. Drug Des., 2013)

Automatically extracting sentences from Medline citations to support clinicians' information needs. - Siddhartha Jonnalagadda; Guilherme Del Fiol; Richard Medlin; Charlene R. Weir; Marcelo Fiszman; Javed Mostafa; Hongfang Liu (J. Am. Medical Informatics Assoc., 2013)

Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification. - Sunghwan Sohn; Kavishwar B. Wagholikar; Dingcheng Li; Siddhartha Jonnalagadda; Cui Tao; Ravikumar Komandur Elayavilli; Hongfang Liu (J. Am. Medical Informatics Assoc., 2013)

An Automated Approach for Ranking Journals to Help in Clinician Decision Support. - Siddhartha Jonnalagadda; Soheil Moosavinasab; Chinmoy Nath; Dingcheng Li; Christopher G. Chute; Hongfang Liu (AMIA, 2014)

Text summarization in the biomedical domain: A systematic review of recent research. - Rashmi Mishra; Jiantao Bian; Marcelo Fiszman; Charlene R. Weir; Siddhartha Jonnalagadda; Javed Mostafa; Guilherme Del Fiol (J. Biomed. Informatics, 2014)

Natural Language Processing and Data Mining for Clinical Text. - Kalpana Raja; Siddhartha Jonnalagadda (Healthcare Data Analytics, 2015)

Classification of Clinically Useful Sentences in MEDLINE. - Mohammad Amin Morid; Siddhartha R. Jonnalagadda; Marcelo Fiszman; Kalpana Raja; Guilherme Del Fiol (AMIA, 2015)

Automated Approach to Extract Cardiovascular Phenotypes from Echocardiography Reports. - Chinmoy Nath; Mazen Albaghdadi; Siddhartha R. Jonnalagadda (AMIA, 2015)

Automated Citation Retrieval System for Clinical Knowledge Management. - Kalpana Raja; Andrew J. Sauer; Melanie R. Klerer; Siddhartha R. Jonnalagadda (AMIA, 2015)

Concept based Information Retrieval for Clinical Case Summaries. - Jakob Stöber; Bret S. E. Heale; Kelley Fulghum; Guilherme Del Fiol; Heejun Kim; Kalpana Raja; Siddhartha Jonnalagadda (TREC, 2015)

Automatically finding relevant citations for clinical guideline development. - Duy Duc An Bui; Siddhartha Jonnalagadda; Guilherme Del Fiol (J. Biomed. Informatics, 2015)

Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge. - James Cormack; Chinmoy Nath; David Milward; Kalpana Raja; Siddhartha R. Jonnalagadda (J. Biomed. Informatics, 2015)

Feasibility of Extracting Key Elements from ClinicalTrials.gov to Support Clinicians' Patient Care Decision. - Heejun Kim; Jiantao Bian; Javed Mostafa; Siddhartha R. Jonnalagadda; Guilherme Del Fiol (AMIA, 2016)

Towards Evidence-Based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns. - Kalpana Raja; Naman Dasot; Pawan Goyal 002; Siddhartha R. Jonnalagadda (CRI, 2016)

An Information Extraction Approach to Prescreen Heart Failure Patients for Clinical Trials. - Abhishek Kalyan Adupa; Ravi Prakash Garg; Jessica Corona-Cox; Sanjiv J. Shah; Siddhartha R. Jonnalagadda (CoRR, 2016)

A Novel Framework to Expedite Systematic Reviews by Automatically Building Information Extraction Training Corpora. - Tanmay Basu; Shraman Kumar; Abhishek Kalyan; Priyanka Jayaswal; Pawan Goyal 002; Stephen Pettifer; Siddhartha Jonnalagadda (CoRR, 2016)

Using Natural Language Processing to Screen Patients with Active Heart Failure: An Exploration for Hospital-wide Surveillance. - Shu Dong; R. Kannan Mutharasan; Siddhartha Jonnalagadda (CoRR, 2016)

A Bootstrap Machine Learning Approach to Identify Rare Disease Patients from Electronic Health Records. - Ravi Prakash Garg; Shu Dong; Sanjiv J. Shah; Siddhartha R. Jonnalagadda (CoRR, 2016)

CRTS: A type system for representing clinical recommendations. - Ravi Prakash Garg; Kalpana Raja; Siddhartha R. Jonnalagadda (CoRR, 2016)

Automatically extracting, ranking and visually summarizing the treatments for a disease. - Prakash Reddy Putta; John J. Dzak III; Siddhartha R. Jonnalagadda (CoRR, 2016)

A Hybrid Citation Retrieval Algorithm for Evidence-based Clinical Knowledge Summarization: Combining Concept Extraction, Vector Similarity and Query Expansion for High Precision. - Kalpana Raja; Andrew J. Sauer; Ravi Prakash Garg; Melanie R. Klerer; Siddhartha R. Jonnalagadda (CoRR, 2016)

Formative evaluation of a patient-specific clinical knowledge summarization tool. - Guilherme Del Fiol; Javed Mostafa; Dongqiuye Pu; Richard Medlin; Stacey Slager; Siddhartha Jonnalagadda; Charlene R. Weir (Int. J. Medical Informatics, 2016)

Extractive text summarization system to aid data extraction from full text in systematic review development. - Duy Duc An Bui; Guilherme Del Fiol; John F. Hurdle; Siddhartha Jonnalagadda (J. Biomed. Informatics, 2016)

PDF text classification to leverage information extraction from publication reports. - Duy Duc An Bui; Guilherme Del Fiol; Siddhartha Jonnalagadda (J. Biomed. Informatics, 2016)

Classification of clinically useful sentences in clinical evidence resources. - Mohammad Amin Morid; Marcelo Fiszman; Kalpana Raja; Siddhartha Jonnalagadda; Guilherme Del Fiol (J. Biomed. Informatics, 2016)

Automatic identification of high impact articles in PubMed to support clinical decision making. - Jiantao Bian; Mohammad Amin Morid; Siddhartha Jonnalagadda; Gang Luo 001; Guilherme Del Fiol (J. Biomed. Informatics, 2017)

Feasibility study of audio recording patient-clinician verbal communications in home healthcare settings. - Maryam Zolnoori; Sasha Vergez; Zoran Kostic; Siddhartha R. Jonnalagadda; Maxim Topaz (AMIA, 2021)

Massive-scale Decoding for Text Generation using Lattices. - Jiacheng Xu 001; Siddhartha Jonnalagadda; Greg Durrett (NAACL-HLT, 2022)