Beta-hairpin restraint potentials for calculations of potentials of mean force as a function of beta-hairpin tilt, rotation, and distance. - Jinhyuk Lee; Sihyun Ham; Wonpil Im (J. Comput. Chem., 2009)

Characterizing amyloid-beta protein misfolding from molecular dynamics simulations with explicit water. - Chewook Lee; Sihyun Ham (J. Comput. Chem., 2011)

Site-directed analysis on protein hydrophobicity. - Song-Ho Chong; Sihyun Ham (J. Comput. Chem., 2014)

Comparing the influence of explicit and implicit solvation models on site-specific thermodynamic stability of proteins. - Myung Keun Cho; Song-Ho Chong; Sihyun Ham; Seokmin Shin (J. Comput. Chem., 2023)

Evolutionary conservation of amino acids contributing to the protein folding transition state. - Song-Ho Chong; Sihyun Ham (J. Comput. Chem., 2023)