Detection of the dermis/epidermis boundary in reflectance confocal images using multi-scale classifier with adaptive texture features. - Sila Kurugol; Jennifer G. Dy; Milind Rajadhyaksha; Dana H. Brooks (ISBI, 2008)

Localizing the Dermis/Epidermis Boundary in Reflectance Confocal Microscopy Images with a Hybrid Classification Algorithm. - Sila Kurugol; Jennifer G. Dy; Milind Rajadhyaksha; Dana H. Brooks (ISBI, 2009)

Locally Deformable Shape Model to Improve 3D Level Set Based Esophagus Segmentation. - Sila Kurugol; Necmiye Ozay; Jennifer G. Dy; Gregory C. Sharp; Dana H. Brooks (ICPR, 2010)

3D level set esophagus segmentation in thoracic CT images using spatial, appearance and shape models. - Sila Kurugol; Jennifer G. Dy; Gregory C. Sharp; Dana H. Brooks (ISBI, 2010)

Centerline extraction with principal curve tracing to improve 3D level set esophagus segmentation in CT images. - Sila Kurugol; Erhan Bas; Deniz Erdogmus; Jennifer G. Dy; Gregory C. Sharp; Dana H. Brooks (EMBC, 2011)

Aorta segmentation with a 3D level set approach and quantification of aortic calcifications in non-contrast chest CT. - Sila Kurugol; Raúl San José Estépar; James C. Ross; George R. Washko (EMBC, 2012)

Emphysema classification based on embedded probabilistic PCA. - Teresa Zulueta-Coarasa; Sila Kurugol; James C. Ross; George R. Washko; Raúl San José Estépar (EMBC, 2013)

Ranking and classification of monotonic emphysema patterns with a multi-class hierarchical approach. - Sila Kurugol; George R. Washko; Raúl San José Estépar (ISBI, 2014)

Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM) in Diffusion Weighted MRI Signals of Crohn's Disease. - Sila Kurugol; Moti Freiman; Onur Afacan; Jeannette M. Perez-Rossello; Michael J. Callahan; Simon K. Warfield (ABDI@MICCAI, 2014)

Structural and diffusion weighted MRI registration for biomarker fusion in Crohn's disease diagnosis. - Vahid Taimouri; Sila Kurugol; Sean Clancy; Moti Freiman; Simon K. Warfield (ISBI, 2015)

Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME). - Sila Kurugol; Moti Freiman; Onur Afacan; Liran Domachevsky; Jeannette M. Perez-Rossello; Michael J. Callahan; Simon K. Warfield (MICCAI (3), 2015)

Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI. - Sila Kurugol; Moti Freiman; Onur Afacan; Jeannette M. Perez-Rossello; Michael J. Callahan; Simon K. Warfield (Medical Image Anal., 2016)

Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. - Sila Kurugol; Bahram Marami; Onur Afacan; Simon K. Warfield; Ali Gholipour (CMMI/RAMBO/SWITCH@MICCAI, 2017)

Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation. - Sila Kurugol; Moti Freiman; Onur Afacan; Liran Domachevsky; Jeannette M. Perez-Rossello; Michael J. Callahan; Simon K. Warfield (Medical Image Anal., 2017)

Automatic renal segmentation in DCE-MRI using convolutional neural networks. - Marzieh Haghighi; Simon K. Warfield; Sila Kurugol (ISBI, 2018)

Semi-automated Extraction of Crohns Disease MR Imaging Markers Using a 3D Residual CNN with Distance Prior. - Yechiel Lamash; Sila Kurugol; Simon K. Warfield (DLMIA/ML-CDS@MICCAI, 2018)

Active Deep Learning with Fisher Information for Patch-Wise Semantic Segmentation. - Jamshid Sourati; Ali Gholipour; Jennifer G. Dy; Sila Kurugol; Simon K. Warfield (DLMIA/ML-CDS@MICCAI, 2018)

Linear Time Invariant Model Based Motion Correction (LiMo-MoCo) of Dynamic Radial Contrast Enhanced MRI. - Jaume Coll-Font; Onur Afacan; Jeanne Chow; Sila Kurugol (MICCAI (2), 2019)

Weakly Supervised Segmentation by a Deep Geodesic Prior. - Aliasghar Mortazi; Naji Khosravan; Drew A. Torigian; Sila Kurugol; Ulas Bagci (MLMI@MICCAI, 2019)

Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning. - Jamshid Sourati; Ali Gholipour; Jennifer G. Dy; Xavier Tomas-Fernandez; Sila Kurugol; Simon K. Warfield (IEEE Trans. Medical Imaging, 2019)

3D Deep Learning for Anatomical Structure Segmentation in Multiple Imaging Modalities. - Barbara Villarini; Hykoush Asaturyan; Sila Kurugol; Onur Afacan; Jimmy D. Bell; E. Louise Thomas (CBMS, 2021)

Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function. - Jaume Coll-Font; Onur Afacan; Jeanne Chow; Richard S. Lee; Simon K. Warfield; Sila Kurugol (Medical Image Anal., 2021)

Improving Automatic Renal Segmentation in Clinically Normal and Abnormal Paediatric DCE-MRI via Contrast Maximisation and Convolutional Networks for Computing Markers of Kidney Function. - Hykoush Asaturyan; Barbara Villarini; Karen Sarao; Jeanne Chow; Onur Afacan; Sila Kurugol (Sensors, 2021)

qDWI-Morph: Motion-Compensated Quantitative Diffusion-Weighted MRI Analysis for Fetal Lung Maturity Assessment. - Yael Zaffrani-Reznikov; Onur Afacan; Sila Kurugol; Simon K. Warfield; Moti Freiman (ECCV Workshops (3), 2022)

SUPER-IVIM-DC: Intra-voxel Incoherent Motion Based Fetal Lung Maturity Assessment from Limited DWI Data Using Supervised Learning Coupled with Data-Consistency. - Noam Korngut; Elad Rotman; Onur Afacan; Sila Kurugol; Yael Zaffrani-Reznikov; Shira Nemirovsky-Rotman; Simon K. Warfield; Moti Freiman (MICCAI (2), 2022)

SynthMap: a generative model for synthesis of 3D datasets for quantitative MRI parameter mapping of myelin water fraction. - Serge Vasylechko Didenko; Simon K. Warfield; Sila Kurugol; Onur Afacan (MIDL, 2022)

Learning the Regularization in DCE-MR Image Reconstruction for Functional Imaging of Kidneys. - Aziz Koçanaogullari; Cemre Ariyurek; Onur Afacan; Sila Kurugol (IEEE Access, 2022)

CORPS: Cost-free Rigorous Pseudo-labeling based on Similarity-ranking for Brain MRI Segmentation. - Can Taylan Sari; Sila Kurugol; Onur Afacan; Simon K. Warfield (CoRR, 2022)

Self Supervised Denoising Diffusion Probabilistic Models for Abdominal DW-MRI. - Serge Vasylechko; Onur Afacan; Sila Kurugol (CDMRI@MICCAI, 2023)

Masked Conditional Diffusion Models for Image Analysis with Application to Radiographic Diagnosis of Infant Abuse. - Shaoju Wu; Sila Kurugol; Andy Tsai (DALI@MICCAI, 2023)

Improving the radiographic image analysis of the classic metaphyseal lesion via conditional diffusion models. - Shaoju Wu; Sila Kurugol; Andy Tsai (Medical Image Anal., 2024)

Improved myelin water fraction mapping with deep neural networks using synthetically generated 3D data. - Serge Vasylechko Didenko; Simon K. Warfield; Sila Kurugol; Onur Afacan (Medical Image Anal., 2024)

Optimizing Respiratory Phase Binning for Improved Motion Correction in Abdominal Diffusion-Weighted MRI. - Michelle Su; Cemre Ariyurek; Serge Vasylechko; Onur Afacan; Sila Kurugol (ISBI, 2025)

IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. - Noga Kertes; Yael Zaffrani-Reznikov; Onur Afacan; Sila Kurugol; Simon K. Warfield; Moti Freiman (Medical Image Anal., 2025)