Applying a Metabolic Footprinting Approach to Characterize the Impact of the Recombinant Protein Production in Escherichia coli. - Sónia Carneiro; Silas Granato Villas-Bôas; Isabel Rocha; Eugénio C. Ferreira (IWPACBB, 2010)

Pathway Activity Profiling (PAPi): from the metabolite profile to the metabolic pathway activity. - Raphael B. M. Aggio; Katya Ruggiero; Silas Granato Villas-Bôas (Bioinform., 2010)

Metab: an R package for high-throughput analysis of metabolomics data generated by GC-MS. - Raphael B. M. Aggio; Silas Granato Villas-Bôas; Katya Ruggiero (Bioinform., 2011)

Algorithms to infer metabolic flux ratios from fluxomics data. - Rafael Carreira; Miguel Rocha 001; Silas Granato Villas-Bôas; Isabel Rocha (BIBM, 2013)

A Method to Calibrate Metabolic Network Models with Experimental Datasets. - Octavio Perez-Garcia; Silas Granato Villas-Bôas; Naresh Singhal (PACBB, 2014)