d-matrix - database exploration, visualization and analysis. - Dominik Seelow; Raffaello Galli; Siegrun Mebus; Hans-Peter Sperling; Hans Lehrach; Silke Sperling (BMC Bioinform., 2004)

Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays (Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays). - Anja von Heydebreck; Silke Sperling; Bogac Kaynak; Hans Lehrach; Martin Vingron (it Inf. Technol., 2004)

Chromosomal clustering of a human transcriptome reveals regulatory background. - Jan H. Vogel; Anja von Heydebreck; Antje Purmann; Silke Sperling (BMC Bioinform., 2005)

Transcriptional regulation at a glance. - Silke Sperling (BMC Bioinform., 2007)

Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts. - Joern Toedling; Oleg Sklyar; Tammo Krueger; Jenny J. Fischer; Silke Sperling; Wolfgang Huber (BMC Bioinform., 2007)