Analysis of an associative memory neural network for pattern identification in gene expression data. - Silvio Bicciato; Mario Pandin; Giuseppe Didone; Carlo Di Bello (BIOKDD, 2001)

PCA disjoint models for multiclass cancer analysis using gene expression data. - Silvio Bicciato; Alessandra Luchini; Carlo Di Bello (Bioinform., 2003)

A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions. - A. Callegaro; Dario Basso; Silvio Bicciato (Bioinform., 2006)

Locally Adaptive Statistical Procedures for the Integrative Analysis on Genomic and Transcriptional Data. - Mattia Zampieri; Ingrid Cifola; Dario Basso; Roberta Spinelli; Luca Beltrame; Clelia Peano; Cristina Battaglia; Silvio Bicciato (WILF, 2007)

Novel definition files for human GeneChips based on GeneAnnot. - Francesco Ferrari; Stefania Bortoluzzi; Alessandro Coppe; Alexandra Sirota; Marilyn Safran; Michael Shmoish; Sergio Ferrari; Doron Lancet; Gian Antonio Danieli; Silvio Bicciato (BMC Bioinform., 2007)

A-MADMAN: Annotation-based microarray data meta-analysis tool. - Andrea Bisognin; Alessandro Coppe; Francesco Ferrari; Davide Risso; Chiara Romualdi; Silvio Bicciato; Stefania Bortoluzzi (BMC Bioinform., 2009)

Critical Analysis of Transcriptional and Post-Transcriptional Regulatory Networks in Multiple Myeloma. - Marta Biasiolo; Mattia Forcato; Lino Possamai; Francesco Ferrari; Luca Agnelli; Marta Lionetti; Katia Todoerti; Antonino Neri; Massimo Marchiori; Stefania Bortoluzzi; Silvio Bicciato (Pacific Symposium on Biocomputing, 2010)

PREDA: an R-package to identify regional variations in genomic data. - Francesco Ferrari; Aldo Solari; Cristina Battaglia; Silvio Bicciato (Bioinform., 2011)

Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review. - Leo Lahti; Martin Schäfer; Hans-Ulrich Klein; Silvio Bicciato; Martin Dugas (Briefings Bioinform., 2013)

UCbase 2.0: ultraconserved sequences database (2014 update). - Vincenzo Lomonaco; Riccardo Martoglia; Federica Mandreoli; Laura Anderlucci; Warren Emmett; Silvio Bicciato; Cristian Taccioli (Database J. Biol. Databases Curation, 2014)

Mutations and Drugs Portal (MDP): A Database Linking Drug Response Data and Genomic Information. - Jimmy Caroli; Cristian Taccioli; Giovanni Sorrentino; Giannino Del Sal; Silvio Bicciato (CBMS, 2016)

APTANI: a computational tool to select aptamers through sequence-structure motif analysis of HT-SELEX data. - Jimmy Caroli; Cristian Taccioli; A. De La Fuente; P. Serafini; Silvio Bicciato (Bioinform., 2016)

WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes. - Simone Puccio; Giorgio Grillo; Flavio Licciulli; Marco Severgnini; Sabino Liuni; Silvio Bicciato; Gianluca De Bellis; Francesco Ferrari; Clelia Peano (Nucleic Acids Res., 2017)

GDA, a web-based tool for Genomics and Drugs integrated analysis. - Jimmy Caroli; Giovanni Sorrentino; Mattia Forcato; Giannino Del Sal; Silvio Bicciato (Nucleic Acids Res., 2018)

APTANI2: update of aptamer selection through sequence-structure analysis. - Jimmy Caroli; Mattia Forcato; Silvio Bicciato (Bioinform., 2020)

Computational methods for the integrative analysis of single-cell data. - Mattia Forcato; Oriana Romano; Silvio Bicciato (Briefings Bioinform., 2021)