UbiBrowser 2.0: a comprehensive resource for proteome-wide known and predicted ubiquitin ligase/deubiquitinase-substrate interactions in eukaryotic species. - Xun Wang; Yang Li; Mengqi He; Xiangren Kong; Peng Jiang; Xi Liu; Lihong Diao; Xinlei Zhang; Honglei Li; Xinping Ling; Simin Xia; Zhongyang Liu; et al. (Nucleic Acids Res., 2022)

Integration of protein sequence and protein-protein interaction data by hypergraph learning to identify novel protein complexes. - Simin Xia; Dianke Li; Xinru Deng; Zhongyang Liu; Huaqing Zhu; Yuan Liu; Dong Li 018 (Briefings Bioinform., 2024)