IgGeneUsage: differential gene usage in immune repertoires. - Simo Kitanovski; Daniel Hoffmann (Bioinform., 2020)

Computational identification and characterization of genotype-phenotype associations - Simo Kitanovski (2021)

scBubbletree: computational approach for visualization of single cell RNA-seq data. - Simo Kitanovski; Yingying Cao; Dimitris Ttoouli; Farnoush Farahpour; Jun Wang; Daniel Hoffmann (BMC Bioinform., 2024)