Estimating the Location and Spatial Extent of a Covert Anthrax Release. - Judith Legrand; Joseph R. Egan; Ian M. Hall; Simon Cauchemez; Steve Leach; Neil M. Ferguson (PLoS Comput. Biol., 2009)

A Bayesian Approach to Quantifying the Effects of Mass Poultry Vaccination upon the Spatial and Temporal Dynamics of H5N1 in Northern Vietnam. - Patrick G. T. Walker; Simon Cauchemez; Raphaëlle Métras; Do Huu Dung; Dirk Pfeiffer; Azra C. Ghani (PLoS Comput. Biol., 2010)

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. - Thibaut Jombart; Anne Cori; Xavier Didelot; Simon Cauchemez; Christophe Fraser; Neil M. Ferguson (PLoS Comput. Biol., 2014)

A Change in Vaccine Efficacy and Duration of Protection Explains Recent Rises in Pertussis Incidence in the United States. - Manoj Gambhir; Thomas A. Clark; Simon Cauchemez; Sara Y. Tartof; David L. Swerdlow; Neil M. Ferguson (PLoS Comput. Biol., 2015)

Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics. - Laura Fumanelli; Marco Ajelli; Stefano Merler; Neil M. Ferguson; Simon Cauchemez (PLoS Comput. Biol., 2016)

Establishment and cryptic transmission of Zika virus in Brazil and the Americas. - Nuno R. Faria; Joshua Quick; I. M. Claro; Julien Thézé; J. G. de Jesus; Marta Giovanetti; Moritz U. G. Kraemer; S. C. Hill; Allison Black; A. C. Da Costa; L. C. Franco; S. P. Silva; et al. (Nat., 2017)

Integrating information from historical data into mechanistic models for influenza forecasting. - Alessio Andronico; Juliette Paireau; Simon Cauchemez (PLoS Comput. Biol., 2024)

Best practices for estimating and reporting epidemiological delay distributions of infectious diseases. - Kelly Charniga; Sang Woo Park; Andrei R. Akhmetzhanov; Anne Cori; Jonathan Dushoff; Sebastian Funk; Katelyn M. Gostic; Natalie M. Linton; Adrian Lison; Christopher E. Overton; Juliet R. C. Pulliam; Thomas Ward; et al. (PLoS Comput. Biol., 2024)

Why the growth of arboviral diseases necessitates a new generation of global risk maps and future projections. - Oliver J. Brady; Leonardo S. Bastos; Jamie M. Caldwell; Simon Cauchemez; Hannah E. Clapham; Illaria Dorigatti; Katy A. M. Gaythorpe; Wenbiao Hu; Laith Hussain-Alkhateeb; Michael A. Johansson; Ahyoung Lim; Velma K. Lopez; et al. (PLoS Comput. Biol., 2025)

RSero: A user-friendly R package to reconstruct pathogen circulation history from seroprevalence studies. - Nathanaël Hozé; Margarita Pons-Salort; C. Jessica E. Metcalf; Michael White; Henrik Salje; Simon Cauchemez (PLoS Comput. Biol., 2025)

Artificial intelligence for modelling infectious disease epidemics. - Moritz U. G. Kraemer; Joseph L.-H. Tsui; Serina Chang; Spyros Lytras; Mark P. Khurana; Samantha Vanderslott; Sumali Bajaj; Neil Scheidwasser; Jacob Liam Curran-Sebastian; Elizaveta Semenova; Mengyan Zhang; H. Juliette T. Unwin; et al. (Nat., 2025)