SERAPHIM: studying environmental rasters and phylogenetically informed movements. - Simon Dellicour; Rebecca Rose; Nuno R. Faria; Philippe Lemey; Oliver G. Pybus (Bioinform., 2016)

Explaining the geographic spread of emerging epidemics: a framework for comparing viral phylogenies and environmental landscape data. - Simon Dellicour; Rebecca Rose; Oliver G. Pybus (BMC Bioinform., 2016)

Virus genomes reveal factors that spread and sustained the Ebola epidemic. - Gytis Dudas; Luiz Max Carvalho; Trevor Bedford; Andrew J. Tatem; Guy Baele; Nuno R. Faria; Daniel J. Park; Jason T. Ladner; Armando Arias; Danny Asogun; Filip Bielejec; Sarah L. Caddy; et al. (Nat., 2017)

Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region. - Simon Dellicour; Philippe Lemey; Jean Artois; Tommy T. Lam; Alice Fusaro; Isabella Monne; Giovanni Cattoli; Dmitry Kuznetsov; Ioannis Xenarios; Gwenaelle Dauphin; Wantanee Kalpravidh; Sophie von Dobschütz; et al. (Bioinform., 2020)

Massive Parallelization Boosts Big Bayesian Multidimensional Scaling. - Andrew J. Holbrook; Philippe Lemey; Guy Baele; Simon Dellicour; Dirk Brockmann; Andrew Rambaut; Marc A. Suchard (J. Comput. Graph. Stat., 2021)