Structure-based evaluation of in silico predictions of protein-protein interactions using Comparative Docking. - Simon J. Cockell; Baldo Oliva; Richard M. Jackson (Bioinform., 2007)

An integrated dataset for in silico drug discovery. - Simon J. Cockell; Jochen Weile; Phillip W. Lord; Claire Wipat; Dmytro Andriychenko; Matthew R. Pocock; Darren J. Wilkinson; Malcolm Young; Anil Wipat (J. Integr. Bioinform., 2010)

Customizable views on semantically integrated networks for systems biology. - Jochen Weile; Matthew R. Pocock; Simon J. Cockell; Phillip W. Lord; James M. Dewar; Eva-Maria Holstein; Darren J. Wilkinson; David A. Lydall; Jennifer Hallinan; Anil Wipat (Bioinform., 2011)

BioStar: An Online Question & Answer Resource for the Bioinformatics Community. - Laurence D. Parnell; Pierre Lindenbaum; Khader Shameer; Giovanni Marco Dall'Olio; Daniel C. Swan; Lars Juhl Jensen; Simon J. Cockell; Brent S. Pedersen; Mary E. Mangan; Christopher A. Miller 002; István Albert (PLoS Comput. Biol., 2011)

Bayesian integration of networks without gold standards. - Jochen Weile; Katherine James; Jennifer Hallinan; Simon J. Cockell; Phillip W. Lord; Anil Wipat; Darren J. Wilkinson (Bioinform., 2012)

Three Steps to Heaven: Semantic Publishing in a Real World Workflow. - Phillip W. Lord; Simon J. Cockell; Robert Stevens 001 (Future Internet, 2012)

The Ontogenesis Knowledgeblog: Lightweight publishing about semantics, with semantics. - Phillip W. Lord; Daniel C. Swan; Simon J. Cockell; Robert Stevens 001 (Bull. IEEE Tech. Comm. Digit. Libr., 2013)

A distributed computational search strategy for the identification of diagnostics targets: Application to finding aptamer targets for methicillin-resistant staphylococci. - Keith Flanagan; Simon J. Cockell; Colin Harwood; Jennifer Hallinan; Sirintra Nakjang; Beth Lawry; Anil Wipat (J. Integr. Bioinform., 2014)

Integration of probabilistic functional networks without an external Gold Standard. - Katherine James; Aoesha Alsobhe; Simon J. Cockell; Anil Wipat; Matthew R. Pocock (BMC Bioinform., 2022)

Lessons from spatial transcriptomics and computational geography in mapping the transcriptome. - Alexis J. Comber; Eleftherios Zormpas; Rachel Queen; Simon J. Cockell (AGILE Conf., 2024)