Process of Building a Vocabulary for the Infection Domain. - Gayo Diallo; Patty Kostkova; Gawesh Jawaheer; Simon Jupp; Robert Stevens 001 (CBMS, 2008)

SKOS with OWL: Don't be Full-ish! - Simon Jupp; Sean Bechhofer; Robert Stevens 001 (OWLED, 2008)

A User-Centred Evaluation Framework for the SeaLife Semantic Web Browsers. - Gayo Diallo; Gemma Madle; Gawesh Jawaheer; Patty Kostkova; Dimitra Alexopoulou; Robert Stevens 001; Simon Jupp; Khaled Khelif (SWAT4LS, 2008)

Knowledge Representation for Web Navigation. - Simon Jupp; Robert Stevens 001; Sean Bechhofer; Yeliz Yesilada; Patty Kostkova (SWAT4LS, 2008)

Using Ontologies and Vocabularies for Dynamic Linking. - Sean Bechhofer; Yeliz Yesilada; Robert Stevens 001; Simon Jupp; Bernard Horan (IEEE Internet Comput., 2008)

A Flexible API and Editor for SKOS. - Simon Jupp; Sean Bechhofer; Robert Stevens 001 (ESWC, 2009)

Mining for Patterns of Semantic Link Usage: Do Domain Users Actually Like Semantic Browsing? - Ed de Quincey; Helen Oliver 001; Patty Kostkova; Gawesh Jawaheer; Gemma Madle; Gayo Diallo; Dimitra Alexopoulou; Michael Schroeder 001; Bianca Habermann; Khaled Khelif; Simon Jupp; Robert Stevens 001 (Web Intelligence/IAT Workshops, 2009)

Issues in learning an ontology from text. - Christopher Brewster; Simon Jupp; Joanne S. Luciano; David M. Shotton; Robert D. Stevens 001; Ziqi Zhang 001 (BMC Bioinform., 2009)

A user-centred evaluation framework for the Sealife semantic web browsers. - Helen Oliver 001; Gayo Diallo; Ed de Quincey; Dimitra Alexopoulou; Bianca Habermann; Patty Kostkova; Michael Schroeder 001; Simon Jupp; Khaled Khelif; Robert Stevens 001; Gawesh Jawaheer; Gemma Madle (BMC Bioinform., 2009)

Populous: A Tool for Populating Templates for OWL Ontologies. - Simon Jupp; Matthew Horridge; Luigi Iannone; Julie Klein 002; Stuart Owen; Joost Schanstra; Robert Stevens 001; Katy Wolstencroft (SWAT4LS, 2010)

Populous: A tool for populating ontology templates - Simon Jupp; Matthew Horridge; Luigi Iannone; Julie Klein 002; Stuart Owen; Joost Schanstra; Robert Stevens 001; Katy Wolstencroft (CoRR, 2010)

Using semantic web technologies to manage complexity and change in biomedical data. - Robert Stevens 001; Simon Jupp; Julie Klein 002; Joost Schanstra (EMBC, 2011)

Populous: A Tool for Populating an Ontology. - Simon Jupp; Matthew Horridge; Luigi Iannone; Julie Klein 002; Stuart Owen; Joost Schanstra; Katy Wolstencroft; Robert Stevens 001 (ICBO, 2011)

Developing a kidney and urinary pathway knowledge base. - Simon Jupp; Julie Klein 002; Joost Schanstra; Robert Stevens 001 (J. Biomed. Semant., 2011)

Taking a view on bio-ontologies. - Simon Jupp; Andrew Gibson; James Malone; Robert Stevens 001 (ICBO, 2012)

Semantic Web Atlas: Putting Gene Expression Data into Biological Context. - Simon Jupp; Helen E. Parkinson; James Malone (SWAT4LS, 2012)

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL. - Simon Jupp; Robert Stevens 001; Robert Hoehndorf (J. Biomed. Semant., 2012)

Populous: a tool for building OWL ontologies from templates. - Simon Jupp; Matthew Horridge; Luigi Iannone; Julie Klein 002; Stuart Owen; Joost Schanstra; Katy Wolstencroft; Robert Stevens 001 (BMC Bioinform., 2012)

Designing superplastic forming process of a developmental AA5456 using pneumatic bulge test experiments and FE-simulation. - Jens Kappes; Mathias Liewald; Simon Jupp; Christoph Pirchl; Roman Herstelle (Prod. Eng., 2012)

Putting OWL into Production at the European Bioinformatics Institute. - James Malone; Tony Burdett; Jon C. Ison; Simon Jupp; Drashtti Vasant; Danielle Welter; Helen E. Parkinson (OWLED, 2013)

The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases. - Panagiotis Moulos; Julie Klein 002; Simon Jupp; Robert Stevens 001; Jean-Loup Bascands; Joost P. Schanstra (BMC Bioinform., 2013)

Stealthy annotation of experimental biology by spreadsheets. - Katherine Wolstencroft; Stuart Owen; Matthew Horridge; Simon Jupp; Olga Krebs; Jacky L. Snoep; Franco B. du Preez; Wolfgang Müller 001; Robert Stevens 001; Carole A. Goble (Concurr. Comput. Pract. Exp., 2013)

Capturing Provenance for a Linkset of Convenience. - Simon Jupp; James Malone; Alasdair J. G. Gray (LISC@ISWC, 2014)

The EBI RDF platform: linked open data for the life sciences. - Simon Jupp; James Malone; Jerven T. Bolleman; Marco Brandizi; Mark Davies; Leyla J. García; Anna Gaulton; Sebastien Gehant; Camille Laibe; Nicole Redaschi; Sarala M. Wimalaratne; Maria Jesus Martin; et al. (Bioinform., 2014)

Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. - Robert Petryszak; Tony Burdett; Benedetto Fiorelli; Nuno A. Fonseca; Mar Gonzalez-Porta; Emma Hastings; Wolfgang Huber; Simon Jupp; Maria Keays; Nataliya Kryvych; Julie A. McMurry; John C. Marioni; et al. (Nucleic Acids Res., 2014)

A new Ontology Lookup Service at EMBL-EBI. - Simon Jupp; Tony Burdett; Catherine Leroy; Helen E. Parkinson (SWAT4LS, 2015)

Collaborative Ontology Development Using the Webulous Architecture and Google App. - Simon Jupp; Danielle Welter; Tony Burdett; Helen E. Parkinson; James Malone (SWAT4LS, 2015)

Biomedical Ontology Evolution in the EMBL-EBI Ontology Lookup Service. - Olga Vrousgou; Tony Burdett; Helen E. Parkinson; Simon Jupp (EDBT/ICDT Workshops, 2016)

Updates from the EMBL-EBI RDF platform. - Thomas Liener; Tony Burdett; Simon Jupp (SWAT4LS, 2016)

Developing a web-based SKOS editor. - Mike Conway; Artem Khojoyan; Fariba Fana; William Scuba; Melissa Castine; Danielle L. Mowery; Wendy W. Chapman; Simon Jupp (J. Biomed. Semant., 2016)

Webulous and the Webulous Google Add-On - a web service and application for ontology building from templates. - Simon Jupp; Tony Burdett; Danielle Welter; Sirarat Sarntivijai; Helen E. Parkinson; James Malone (J. Biomed. Semant., 2016)

The cellular microscopy phenotype ontology. - Simon Jupp; James Malone; Tony Burdett; Jean-Karim Hériché; Eleanor Williams; Jan Ellenberg; Helen E. Parkinson; Gabriella Rustici (J. Biomed. Semant., 2016)

Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation. - Sirarat Sarntivijai; Drashtti Vasant; Simon Jupp; Gary Saunders; A. Patrícia Bento; Daniel Gonzalez; Joanna Betts; Samiul Hasan; Gautier Koscielny; Ian Dunham; Helen E. Parkinson; James Malone (J. Biomed. Semant., 2016)

Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants. - Robert Petryszak; Maria Keays; Y. Amy Tang; Nuno A. Fonseca; Elisabet Barrera; Tony Burdett; Anja Füllgrabe; Alfonso Muñoz-Pomer Fuentes; Simon Jupp; Satu Koskinen; Oliver Mannion; Laura Huerta; et al. (Nucleic Acids Res., 2016)

Ten Simple Rules for Selecting a Bio-ontology. - James Malone; Robert Stevens 001; Simon Jupp; Tom Hancocks; Helen E. Parkinson; Catherine Brooksbank (PLoS Comput. Biol., 2016)

OxO - A Gravy of Ontology Mapping Extracts. - Simon Jupp; Thomas Liener; Sirarat Sarntivijai; Olga Vrousgou; Tony Burdett; Helen E. Parkinson (ICBO, 2017)

Comparison, alignment, and synchronization of cell line information between CLO and EFO. - Edison Ong; Sirarat Sarntivijai; Simon Jupp; Helen E. Parkinson; Yongqun He (BMC Bioinform., 2017)

Human Cell Atlas Ontology. - Danielle Welter; Simon Jupp; David Osumi-Sutherland (ICBO, 2018)

Where Does an Ontology Start? - Henriette Harmse; Mélanie Courtot; Warren Read; Nicolas Matentzoglu; David Osumi-Sutherland; Simon Jupp (ICBO, 2019)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

Expression Atlas update: from tissues to single cells. - Irene Papatheodorou; Pablo A. Moreno; Jonathan R. Manning; Alfonso Muñoz-Pomer Fuentes; Nancy George; Silvie Fexova; Nuno A. Fonseca; Anja Füllgrabe; Matthew Green 005; Ni Huang; Laura Huerta; Haider Iqbal; et al. (Nucleic Acids Res., 2020)

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. - Kent A. Shefchek; Nomi L. Harris; Michael A. Gargano; Nicolas Matentzoglu; Deepak R. Unni; Matthew H. Brush; Dan Keith; Tom Conlin; Nicole A. Vasilevsky; Xingmin Aaron Zhang; James P. Balhoff; Larry Babb; et al. (Nucleic Acids Res., 2020)

Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics. - Maya Ghoussaini; Edward Mountjoy; Miguel Carmona; Gareth Peat; Ellen M. Schmidt; Andrew Hercules; Luca Fumis; Alfredo Miranda; Denise Carvalho-Silva; Annalisa Buniello; Tony Burdett; James D. Hayhurst; et al. (Nucleic Acids Res., 2021)

A Simple Standard for Sharing Ontological Mappings (SSSOM). - Nicolas Matentzoglu; James P. Balhoff; Susan M. Bello; Chris Bizon; Matthew H. Brush; Tiffany J. Callahan; Christopher G. Chute; William D. Duncan; Chris T. A. Evelo; Davera Gabriel; John B. Graybeal; Alasdair J. G. Gray; et al. (Database J. Biol. Databases Curation, 2022)

ELIXIR biovalidator for semantic validation of life science metadata. - Isuru Udara Liyanage; Tony Burdett; Bert Droesbeke; Karoly Erdos; Rolando Fernandez; Alasdair J. G. Gray; Muhammad Haseeb; Simon Jupp; Flavia Penim; Cyril Pommier; Philippe Rocca-Serra; Mélanie Courtot; et al. (Bioinform., 2022)

Features of a FAIR vocabulary. - Fuqi Xu; Nick S. Juty; Carole A. Goble; Simon Jupp; Helen E. Parkinson; Mélanie Courtot (J. Biomed. Semant., 2023)

Vision for modular taxonomy production at Elsevier: The VOICE project. - Wytze J. Vlietstra; Matthias Albus; Nick Drummond; Simon Jupp; George Georghiou (SWAT4HCLS, 2024)