Conditional Generation of Paired Antibody Chain Sequences through Encoder-Decoder Language Model. - Simon K. S. Chu; Kathy Y. Wei (CoRR, 2023)

Protein stability prediction by fine-tuning a protein language model on a mega-scale dataset. - Simon K. S. Chu; Kush Narang; Justin B. Siegel (PLoS Comput. Biol., 2024)

ToxBench: A Binding Affinity Prediction Benchmark with AB-FEP-Calculated Labels for Human Estrogen Receptor Alpha. - Meng Liu 015; Karl Leswing; Simon K. S. Chu; Farhad Ramezanghorbani; Griffin Young; Gabriel Marques; Prerna Das; Anjali Panikar; Esther Jamir; Mohammed Sulaiman Shamsudeen; K. Shawn Watts; Ananya Sen; et al. (CoRR, 2025)